Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T0J entry

There is 1 chain in PDB entry 8T0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 8T0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 18Right-handed alpha
Helix 2
AA2
A
18 30Right-handed alpha
Helix 3
AA3
A
44 49Right-handed 310
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
A
90 101Right-handed alpha
Helix 6
AA6
A
109 117Right-handed alpha
Helix 7
AA7
A
118 120Right-handed 310
Helix 8
AA8
A
121 141Right-handed alpha
Helix 9
AA9
A
149 153Right-handed 310
Helix 10
AB1
A
155 164Right-handed alpha
Helix 11
AB2
A
199 204Right-handed alpha
Helix 12
AB3
A
210 223Right-handed alpha
Helix 13
AB4
A
241 255Right-handed alpha
Helix 14
AB5
A
261 266Right-handed 310
Helix 15
AB6
A
269 273Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8T0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
35 39parallel
Strand 3
A
2 10parallel
Strand 4
A
229 233parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
35 39parallel
Strand 3
A
2 10parallel
Strand 4
A
257 260parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
169 170parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
275 281parallel
Strand 4
A
290 294anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il