Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T0U entry

There are 8 chains in PDB entry 8T0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ALA 358
B	GLN 3	THR 360
C	GLN 3	ALA 355
D	GLN 4	ALA 355
E	GLN 3	ALA 361
F	GLN 3	ALA 355
G	ALA 5	GLU 352
H	ALA 5	ALA 355

There are100 helices in PDB entry 8T0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	46	Right-handed alpha
Helix 2	AA2	A	67	78	Right-handed alpha
Helix 3	AA3	A	94	109	Right-handed alpha
Helix 4	AA4	A	122	129	Right-handed alpha
Helix 5	AA5	A	135	156	Right-handed alpha
Helix 6	AA6	A	189	200	Right-handed alpha
Helix 7	AA7	A	209	227	Right-handed alpha
Helix 8	AA8	A	244	257	Right-handed alpha
Helix 9	AA9	A	290	297	Right-handed alpha
Helix 10	AB1	A	298	303	Right-handed 310
Helix 11	AB2	A	307	321	Right-handed alpha
Helix 12	AB3	A	332	344	Right-handed alpha
Helix 13	AB4	A	344	355	Right-handed alpha
Helix 14	AB5	B	31	46	Right-handed alpha
Helix 15	AB6	B	67	78	Right-handed alpha
Helix 16	AB7	B	94	109	Right-handed alpha
Helix 17	AB8	B	122	129	Right-handed alpha
Helix 18	AB9	B	135	156	Right-handed alpha
Helix 19	AC1	B	189	200	Right-handed alpha
Helix 20	AC2	B	209	227	Right-handed alpha
Helix 21	AC3	B	244	258	Right-handed alpha
Helix 22	AC4	B	290	297	Right-handed alpha
Helix 23	AC5	B	298	303	Right-handed 310
Helix 24	AC6	B	307	321	Right-handed alpha
Helix 25	AC7	B	332	360	Right-handed alpha
Helix 26	AC8	C	31	46	Right-handed alpha
Helix 27	AC9	C	67	78	Right-handed alpha
Helix 28	AD1	C	94	109	Right-handed alpha
Helix 29	AD2	C	122	129	Right-handed alpha
Helix 30	AD3	C	135	156	Right-handed alpha
Helix 31	AD4	C	189	200	Right-handed alpha
Helix 32	AD5	C	209	227	Right-handed alpha
Helix 33	AD6	C	244	256	Right-handed alpha
Helix 34	AD7	C	290	297	Right-handed alpha
Helix 35	AD8	C	298	303	Right-handed 310
Helix 36	AD9	C	307	321	Right-handed alpha
Helix 37	AE1	C	332	344	Right-handed alpha
Helix 38	AE2	C	344	355	Right-handed alpha
Helix 39	AE3	D	31	46	Right-handed alpha
Helix 40	AE4	D	67	78	Right-handed alpha
Helix 41	AE5	D	94	109	Right-handed alpha
Helix 42	AE6	D	122	129	Right-handed alpha
Helix 43	AE7	D	135	156	Right-handed alpha
Helix 44	AE8	D	189	200	Right-handed alpha
Helix 45	AE9	D	209	227	Right-handed alpha
Helix 46	AF1	D	244	258	Right-handed alpha
Helix 47	AF2	D	297	303	Right-handed 310
Helix 48	AF3	D	307	321	Right-handed alpha
Helix 49	AF4	D	332	344	Right-handed alpha
Helix 50	AF5	D	344	355	Right-handed alpha
Helix 51	AF6	E	31	46	Right-handed alpha
Helix 52	AF7	E	67	78	Right-handed alpha
Helix 53	AF8	E	94	109	Right-handed alpha
Helix 54	AF9	E	122	129	Right-handed alpha
Helix 55	AG1	E	135	156	Right-handed alpha
Helix 56	AG2	E	189	200	Right-handed alpha
Helix 57	AG3	E	209	227	Right-handed alpha
Helix 58	AG4	E	244	258	Right-handed alpha
Helix 59	AG5	E	290	297	Right-handed alpha
Helix 60	AG6	E	298	303	Right-handed 310
Helix 61	AG7	E	307	321	Right-handed alpha
Helix 62	AG8	E	332	344	Right-handed alpha
Helix 63	AG9	E	344	360	Right-handed alpha
Helix 64	AH1	F	31	46	Right-handed alpha
Helix 65	AH2	F	67	78	Right-handed alpha
Helix 66	AH3	F	94	109	Right-handed alpha
Helix 67	AH4	F	122	129	Right-handed alpha
Helix 68	AH5	F	135	156	Right-handed alpha
Helix 69	AH6	F	189	200	Right-handed alpha
Helix 70	AH7	F	209	227	Right-handed alpha
Helix 71	AH8	F	244	258	Right-handed alpha
Helix 72	AH9	F	290	297	Right-handed alpha
Helix 73	AI1	F	298	303	Right-handed 310
Helix 74	AI2	F	307	321	Right-handed alpha
Helix 75	AI3	F	332	344	Right-handed alpha
Helix 76	AI4	F	344	355	Right-handed alpha
Helix 77	AI5	G	31	46	Right-handed alpha
Helix 78	AI6	G	67	78	Right-handed alpha
Helix 79	AI7	G	94	109	Right-handed alpha
Helix 80	AI8	G	122	129	Right-handed alpha
Helix 81	AI9	G	135	156	Right-handed alpha
Helix 82	AJ1	G	189	200	Right-handed alpha
Helix 83	AJ2	G	209	227	Right-handed alpha
Helix 84	AJ3	G	244	256	Right-handed alpha
Helix 85	AJ4	G	297	303	Right-handed 310
Helix 86	AJ5	G	307	321	Right-handed alpha
Helix 87	AJ6	G	332	344	Right-handed alpha
Helix 88	AJ7	G	344	352	Right-handed alpha
Helix 89	AJ8	H	31	46	Right-handed alpha
Helix 90	AJ9	H	67	78	Right-handed alpha
Helix 91	AK1	H	94	109	Right-handed alpha
Helix 92	AK2	H	122	129	Right-handed alpha
Helix 93	AK3	H	135	156	Right-handed alpha
Helix 94	AK4	H	189	200	Right-handed alpha
Helix 95	AK5	H	209	227	Right-handed alpha
Helix 96	AK6	H	244	256	Right-handed alpha
Helix 97	AK7	H	298	303	Right-handed 310
Helix 98	AK8	H	307	321	Right-handed alpha
Helix 99	AK9	H	332	344	Right-handed alpha
Helix 100	AL1	H	344	355	Right-handed alpha

There are 24 sheets in PDB entry 8T0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	49	51	parallel
Strand 3	A	83	88	parallel
Strand 4	A	113	117	parallel
Strand 5	A	183	185	parallel
Strand 6	A	202	205	parallel
Strand 7	A	232	238	parallel
Strand 8	A	325	329	parallel
Strand 9	A	7	11	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	167	171	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	305	306	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	49	51	parallel
Strand 3	B	83	88	parallel
Strand 4	B	113	117	parallel
Strand 5	B	183	185	parallel
Strand 6	B	202	205	parallel
Strand 7	B	232	238	parallel
Strand 8	B	325	329	parallel
Strand 9	B	7	11	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	167	171	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	305	306	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	49	51	parallel
Strand 3	C	83	88	parallel
Strand 4	C	113	117	parallel
Strand 5	C	183	185	parallel
Strand 6	C	202	205	parallel
Strand 7	C	232	238	parallel
Strand 8	C	325	329	parallel
Strand 9	C	7	11	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	167	171	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	305	306	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	49	51	parallel
Strand 3	D	83	88	parallel
Strand 4	D	113	117	parallel
Strand 5	D	183	185	parallel
Strand 6	D	202	205	parallel
Strand 7	D	232	238	parallel
Strand 8	D	325	329	parallel
Strand 9	D	7	11	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	167	171	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	305	306	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	49	51	parallel
Strand 3	E	83	88	parallel
Strand 4	E	113	117	parallel
Strand 5	E	183	185	parallel
Strand 6	E	202	205	parallel
Strand 7	E	232	238	parallel
Strand 8	E	325	329	parallel
Strand 9	E	7	11	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	167	171	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	241	first strand
Strand 2	E	305	306	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	49	51	parallel
Strand 3	F	83	88	parallel
Strand 4	F	113	117	parallel
Strand 5	F	183	185	parallel
Strand 6	F	202	205	parallel
Strand 7	F	232	238	parallel
Strand 8	F	325	329	parallel
Strand 9	F	7	11	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	167	171	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	241	first strand
Strand 2	F	305	306	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	11	first strand
Strand 2	G	49	51	parallel
Strand 3	G	83	88	parallel
Strand 4	G	113	117	parallel
Strand 5	G	183	185	parallel
Strand 6	G	202	205	parallel
Strand 7	G	232	238	parallel
Strand 8	G	325	329	parallel
Strand 9	G	7	11	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	167	171	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	241	first strand
Strand 2	G	305	306	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	11	first strand
Strand 2	H	49	51	parallel
Strand 3	H	83	88	parallel
Strand 4	H	113	117	parallel
Strand 5	H	183	185	parallel
Strand 6	H	202	205	parallel
Strand 7	H	232	238	parallel
Strand 8	H	325	329	parallel
Strand 9	H	7	11	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	167	171	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	241	first strand
Strand 2	H	305	306	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0U