Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T0V entry

There are 4 chains in PDB entry 8T0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 520
B
 MET 1GLY 520
C
 LYS 11ILE 94
D
 LYS 11LYS 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8T0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 32Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
58 71Right-handed alpha
Helix 4
AA4
A
72 75Right-handed 310
Helix 5
AA5
A
76 89Right-handed alpha
Helix 6
AA6
A
91 102Right-handed alpha
Helix 7
AA7
A
113 147Right-handed alpha
Helix 8
AA8
A
162 177Right-handed alpha
Helix 9
AA9
A
210 229Right-handed alpha
Helix 10
AB1
A
242 253Right-handed alpha
Helix 11
AB2
A
261 269Right-handed alpha
Helix 12
AB3
A
272 291Right-handed alpha
Helix 13
AB4
A
298 305Right-handed alpha
Helix 14
AB5
A
310 329Right-handed alpha
Helix 15
AB6
A
331 333Right-handed 310
Helix 16
AB7
A
349 365Right-handed alpha
Helix 17
AB8
A
382 401Right-handed alpha
Helix 18
AB9
A
418 436Right-handed alpha
Helix 19
AC1
A
438 442Right-handed alpha
Helix 20
AC2
A
449 473Right-handed alpha
Helix 21
AC3
A
473 480Right-handed alpha
Helix 22
AC4
A
495 497Right-handed 310
Helix 23
AC5
A
508 518Right-handed alpha
Helix 24
AC6
B
9 32Right-handed alpha
Helix 25
AC7
B
37 48Right-handed alpha
Helix 26
AC8
B
58 71Right-handed alpha
Helix 27
AC9
B
72 75Right-handed 310
Helix 28
AD1
B
76 89Right-handed alpha
Helix 29
AD2
B
91 102Right-handed alpha
Helix 30
AD3
B
105 109Right-handed 310
Helix 31
AD4
B
113 147Right-handed alpha
Helix 32
AD5
B
162 176Right-handed alpha
Helix 33
AD6
B
210 229Right-handed alpha
Helix 34
AD7
B
242 254Right-handed alpha
Helix 35
AD8
B
261 270Right-handed alpha
Helix 36
AD9
B
272 291Right-handed alpha
Helix 37
AE1
B
298 303Right-handed alpha
Helix 38
AE2
B
311 329Right-handed alpha
Helix 39
AE3
B
331 333Right-handed 310
Helix 40
AE4
B
349 365Right-handed alpha
Helix 41
AE5
B
382 400Right-handed alpha
Helix 42
AE6
B
418 436Right-handed alpha
Helix 43
AE7
B
449 473Right-handed alpha
Helix 44
AE8
B
473 480Right-handed alpha
Helix 45
AE9
B
495 497Right-handed 310
Helix 46
AF1
B
509 517Right-handed alpha
Helix 47
AF2
C
45 60Right-handed alpha
Helix 48
AF3
D
45 60Right-handed alpha
Helix 49
AF4
D
105 117Right-handed alpha
Helix 50
AF5
D
134 142Right-handed alpha
Helix 51
AF6
D
151 155Right-handed 310
Helix 52
AF7
D
168 180Right-handed alpha
Helix 53
AF8
D
194 211Right-handed alpha
Helix 54
AF9
D
212 216Right-handed 310
Helix 55
AG1
D
226 234Right-handed alpha
Helix 56
AG2
D
244 260Right-handed alpha
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There are 7 sheets in PDB entry 8T0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
499 501anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
293 295parallel
Strand 3
A
257 259parallel
Strand 4
A
233 237parallel
Strand 5
A
180 183parallel
Strand 6
A
153 158parallel
Strand 7
A
404 406parallel
Strand 8
A
371 373parallel
Strand 9
A
338 340parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
B
443 445anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
499 501anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 336first strand
Strand 2
B
293 295parallel
Strand 3
B
257 259parallel
Strand 4
B
233 237parallel
Strand 5
B
180 183parallel
Strand 6
B
153 158parallel
Strand 7
B
404 406parallel
Strand 8
B
371 373parallel
Strand 9
B
338 340parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 73first strand
Strand 2
C
76 85anti-parallel
Strand 3
C
33 40anti-parallel
Strand 4
D
33 40anti-parallel
Strand 5
D
77 84anti-parallel
Strand 6
D
62 71anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 167first strand
Strand 2
D
121 128parallel
Strand 3
D
183 187parallel
Strand 4
D
217 221parallel
Strand 5
D
238 239parallel
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