Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T0W entry

There are 4 chains in PDB entry 8T0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ALA 358
B	GLN 4	ALA 358
C	GLN 4	ALA 358
D	GLN 4	LYS 176

There are120 helices in PDB entry 8T0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	46	Right-handed alpha
Helix 2	AA2	A	67	78	Right-handed alpha
Helix 3	AA3	A	94	109	Right-handed alpha
Helix 4	AA4	A	122	129	Right-handed alpha
Helix 5	AA5	A	135	156	Right-handed alpha
Helix 6	AA6	A	189	197	Right-handed alpha
Helix 7	AA7	A	209	228	Right-handed alpha
Helix 8	AA8	A	244	258	Right-handed alpha
Helix 9	AA9	A	260	271	Right-handed alpha
Helix 10	AB1	A	272	278	Right-handed 310
Helix 11	AB2	A	289	294	Right-handed alpha
Helix 12	AB3	A	298	303	Right-handed 310
Helix 13	AB4	A	307	320	Right-handed alpha
Helix 14	AB5	A	332	344	Right-handed alpha
Helix 15	AB6	A	344	357	Right-handed alpha
Helix 16	AB7	B	31	46	Right-handed alpha
Helix 17	AB8	B	67	78	Right-handed alpha
Helix 18	AB9	B	94	109	Right-handed alpha
Helix 19	AC1	B	122	129	Right-handed alpha
Helix 20	AC2	B	135	156	Right-handed alpha
Helix 21	AC3	B	189	200	Right-handed alpha
Helix 22	AC4	B	209	228	Right-handed alpha
Helix 23	AC5	B	244	258	Right-handed alpha
Helix 24	AC6	B	260	272	Right-handed alpha
Helix 25	AC7	B	273	278	Right-handed 310
Helix 26	AC8	B	289	294	Right-handed alpha
Helix 27	AC9	B	298	303	Right-handed 310
Helix 28	AD1	B	307	320	Right-handed alpha
Helix 29	AD2	B	332	344	Right-handed alpha
Helix 30	AD3	B	344	358	Right-handed alpha
Helix 31	AD4	C	31	46	Right-handed alpha
Helix 32	AD5	C	67	78	Right-handed alpha
Helix 33	AD6	C	94	109	Right-handed alpha
Helix 34	AD7	C	122	129	Right-handed alpha
Helix 35	AD8	C	135	156	Right-handed alpha
Helix 36	AD9	C	189	200	Right-handed alpha
Helix 37	AE1	C	209	228	Right-handed alpha
Helix 38	AE2	C	244	258	Right-handed alpha
Helix 39	AE3	C	260	271	Right-handed alpha
Helix 40	AE4	C	272	278	Right-handed 310
Helix 41	AE5	C	289	294	Right-handed alpha
Helix 42	AE6	C	298	303	Right-handed 310
Helix 43	AE7	C	307	320	Right-handed alpha
Helix 44	AE8	C	332	344	Right-handed alpha
Helix 45	AE9	C	344	357	Right-handed alpha
Helix 46	AF1	D	31	46	Right-handed alpha
Helix 47	AF2	D	67	78	Right-handed alpha
Helix 48	AF3	D	94	109	Right-handed alpha
Helix 49	AF4	D	122	129	Right-handed alpha
Helix 50	AF5	D	135	156	Right-handed alpha
Helix 51	AF6	D	189	200	Right-handed alpha
Helix 52	AF7	D	209	227	Right-handed alpha
Helix 53	AF8	D	244	258	Right-handed alpha
Helix 54	AF9	D	260	272	Right-handed alpha
Helix 55	AG1	D	273	278	Right-handed 310
Helix 56	AG2	D	289	294	Right-handed alpha
Helix 57	AG3	D	298	303	Right-handed 310
Helix 58	AG4	D	307	320	Right-handed alpha
Helix 59	AG5	D	332	344	Right-handed alpha
Helix 60	AG6	D	344	357	Right-handed alpha
Helix 61	AG7	E	31	46	Right-handed alpha
Helix 62	AG8	E	67	78	Right-handed alpha
Helix 63	AG9	E	94	109	Right-handed alpha
Helix 64	AH1	E	122	129	Right-handed alpha
Helix 65	AH2	E	135	156	Right-handed alpha
Helix 66	AH3	E	189	197	Right-handed alpha
Helix 67	AH4	E	209	228	Right-handed alpha
Helix 68	AH5	E	244	258	Right-handed alpha
Helix 69	AH6	E	260	272	Right-handed alpha
Helix 70	AH7	E	273	278	Right-handed 310
Helix 71	AH8	E	289	294	Right-handed alpha
Helix 72	AH9	E	298	303	Right-handed 310
Helix 73	AI1	E	307	320	Right-handed alpha
Helix 74	AI2	E	332	344	Right-handed alpha
Helix 75	AI3	E	344	358	Right-handed alpha
Helix 76	AI4	F	31	46	Right-handed alpha
Helix 77	AI5	F	67	78	Right-handed alpha
Helix 78	AI6	F	94	109	Right-handed alpha
Helix 79	AI7	F	122	129	Right-handed alpha
Helix 80	AI8	F	135	156	Right-handed alpha
Helix 81	AI9	F	189	200	Right-handed alpha
Helix 82	AJ1	F	209	228	Right-handed alpha
Helix 83	AJ2	F	244	258	Right-handed alpha
Helix 84	AJ3	F	260	272	Right-handed alpha
Helix 85	AJ4	F	273	278	Right-handed 310
Helix 86	AJ5	F	289	294	Right-handed alpha
Helix 87	AJ6	F	298	303	Right-handed 310
Helix 88	AJ7	F	307	321	Right-handed alpha
Helix 89	AJ8	F	332	344	Right-handed alpha
Helix 90	AJ9	F	344	357	Right-handed alpha
Helix 91	AK1	G	31	46	Right-handed alpha
Helix 92	AK2	G	67	78	Right-handed alpha
Helix 93	AK3	G	94	109	Right-handed alpha
Helix 94	AK4	G	122	129	Right-handed alpha
Helix 95	AK5	G	135	156	Right-handed alpha
Helix 96	AK6	G	189	200	Right-handed alpha
Helix 97	AK7	G	209	227	Right-handed alpha
Helix 98	AK8	G	244	258	Right-handed alpha
Helix 99	AK9	G	260	272	Right-handed alpha
Helix 100	AL1	G	273	278	Right-handed 310
Helix 101	AL2	G	289	294	Right-handed alpha
Helix 102	AL3	G	298	303	Right-handed 310
Helix 103	AL4	G	307	320	Right-handed alpha
Helix 104	AL5	G	332	344	Right-handed alpha
Helix 105	AL6	G	344	358	Right-handed alpha
Helix 106	AL7	H	31	46	Right-handed alpha
Helix 107	AL8	H	67	78	Right-handed alpha
Helix 108	AL9	H	94	109	Right-handed alpha
Helix 109	AM1	H	122	129	Right-handed alpha
Helix 110	AM2	H	135	156	Right-handed alpha
Helix 111	AM3	H	189	200	Right-handed alpha
Helix 112	AM4	H	209	228	Right-handed alpha
Helix 113	AM5	H	244	258	Right-handed alpha
Helix 114	AM6	H	260	272	Right-handed alpha
Helix 115	AM7	H	273	278	Right-handed 310
Helix 116	AM8	H	289	294	Right-handed alpha
Helix 117	AM9	H	298	303	Right-handed 310
Helix 118	AN1	H	307	320	Right-handed alpha
Helix 119	AN2	H	332	344	Right-handed alpha
Helix 120	AN3	H	344	357	Right-handed alpha

There are 24 sheets in PDB entry 8T0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	12	first strand
Strand 2	A	49	52	parallel
Strand 3	A	83	88	parallel
Strand 4	A	113	118	parallel
Strand 5	A	183	186	parallel
Strand 6	A	202	205	parallel
Strand 7	A	232	238	parallel
Strand 8	A	325	329	parallel
Strand 9	A	7	12	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	167	171	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	305	306	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	49	52	parallel
Strand 3	B	83	88	parallel
Strand 4	B	113	118	parallel
Strand 5	B	183	186	parallel
Strand 6	B	202	205	parallel
Strand 7	B	232	238	parallel
Strand 8	B	325	329	parallel
Strand 9	B	7	12	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	167	171	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	305	306	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	49	52	parallel
Strand 3	C	83	88	parallel
Strand 4	C	113	118	parallel
Strand 5	C	183	186	parallel
Strand 6	C	202	205	parallel
Strand 7	C	232	238	parallel
Strand 8	C	325	329	parallel
Strand 9	C	7	11	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	167	171	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	305	306	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	49	52	parallel
Strand 3	D	83	88	parallel
Strand 4	D	113	118	parallel
Strand 5	D	183	186	parallel
Strand 6	D	202	205	parallel
Strand 7	D	232	238	parallel
Strand 8	D	325	329	parallel
Strand 9	D	7	12	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	167	171	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	305	306	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	12	first strand
Strand 2	E	49	52	parallel
Strand 3	E	83	88	parallel
Strand 4	E	113	118	parallel
Strand 5	E	183	186	parallel
Strand 6	E	202	205	parallel
Strand 7	E	232	238	parallel
Strand 8	E	325	329	parallel
Strand 9	E	7	12	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	167	171	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	241	first strand
Strand 2	E	305	306	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	12	first strand
Strand 2	F	49	52	parallel
Strand 3	F	83	88	parallel
Strand 4	F	113	118	parallel
Strand 5	F	183	186	parallel
Strand 6	F	202	205	parallel
Strand 7	F	232	238	parallel
Strand 8	F	325	329	parallel
Strand 9	F	7	12	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	167	171	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	241	first strand
Strand 2	F	305	306	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	12	first strand
Strand 2	G	49	52	parallel
Strand 3	G	83	88	parallel
Strand 4	G	113	118	parallel
Strand 5	G	183	186	parallel
Strand 6	G	202	205	parallel
Strand 7	G	232	238	parallel
Strand 8	G	325	329	parallel
Strand 9	G	7	12	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	167	171	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	241	first strand
Strand 2	G	305	306	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	49	52	parallel
Strand 3	H	83	88	parallel
Strand 4	H	113	118	parallel
Strand 5	H	183	186	parallel
Strand 6	H	202	205	parallel
Strand 7	H	232	238	parallel
Strand 8	H	325	329	parallel
Strand 9	H	7	12	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	167	171	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	241	first strand
Strand 2	H	305	306	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T0W