Analysis of interatomic Contacts of Structural Units in PDB entry:
8T12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T12 entry

There are 2 chains in PDB entry 8T12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 506
B
 THR 8MET 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8T12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
11 25Right-handed alpha
Helix 3
AA3
A
28 35Right-handed alpha
Helix 4
AA4
A
35 42Right-handed alpha
Helix 5
AA5
A
43 49Right-handed alpha
Helix 6
AA6
A
54 76Right-handed alpha
Helix 7
AA7
A
82 94Right-handed alpha
Helix 8
AA8
A
95 100Right-handed 310
Helix 9
AA9
A
101 127Right-handed alpha
Helix 10
AB1
A
141 184Right-handed alpha
Helix 11
AB2
A
189 247Right-handed alpha
Helix 12
AB3
A
255 284Right-handed alpha
Helix 13
AB4
A
292 315Right-handed alpha
Helix 14
AB5
A
387 394Right-handed alpha
Helix 15
AB6
A
461 474Right-handed alpha
Helix 16
AB7
A
499 504Right-handed alpha
Helix 17
AB8
B
9 19Right-handed alpha
Helix 18
AB9
B
21 29Right-handed alpha
Helix 19
AC1
B
40 47Right-handed alpha
Helix 20
AC2
B
57 68Right-handed alpha
Helix 21
AC3
B
85 93Right-handed alpha
Helix 22
AC4
B
120 122Right-handed 310
Helix 23
AC5
B
131 135Right-handed 310
Helix 24
AC6
B
153 170Right-handed alpha
Helix 25
AC7
B
187 202Right-handed alpha
Helix 26
AC8
B
227 243Right-handed alpha
Helix 27
AC9
B
273 288Right-handed alpha
Helix 28
AD1
B
289 292Right-handed 310
Helix 29
AD2
B
329 333Right-handed 310
Helix 30
AD3
B
335 341Right-handed alpha
Helix 31
AD4
B
347 358Right-handed alpha
Helix 32
AD5
B
367 386Right-handed alpha
Helix 33
AD6
B
395 405Right-handed alpha
Helix 34
AD7
B
421 428Right-handed alpha
Helix 35
AD8
B
428 443Right-handed alpha
Helix 36
AD9
B
462 466Right-handed 310
Helix 37
AE1
B
479 490Right-handed alpha
Helix 38
AE2
B
490 495Right-handed alpha
Helix 39
AE3
B
511 513Right-handed 310
Helix 40
AE4
B
514 523Right-handed alpha
Helix 41
AE5
B
537 542Right-handed 310
Helix 42
AE6
B
543 551Right-handed alpha
Helix 43
AE7
B
552 557Right-handed 310
Helix 44
AE8
B
558 572Right-handed alpha
Helix 45
AE9
B
602 627Right-handed alpha
Helix 46
AF1
B
639 656Right-handed alpha
Helix 47
AF2
B
671 677Right-handed 310
Helix 48
AF3
B
678 684Right-handed alpha
Helix 49
AF4
B
730 739Right-handed alpha
Helix 50
AF5
B
747 758Right-handed alpha
Helix 51
AF6
B
760 765Right-handed alpha
Helix 52
AF7
B
769 783Right-handed alpha
Helix 53
AF8
B
808 818Right-handed alpha
Helix 54
AF9
B
841 848Right-handed alpha
Helix 55
AG1
B
854 860Right-handed alpha
Helix 56
AG2
B
866 874Right-handed alpha
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There are 9 sheets in PDB entry 8T12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 323first strand
Strand 2
A
340 346anti-parallel
Strand 3
A
397 403anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
454 456parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 386first strand
Strand 2
A
357 363anti-parallel
Strand 3
A
431 439anti-parallel
Strand 4
A
442 449anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
405 407anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
251 253parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
97 103parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
177 182parallel
Strand 6
B
218 221anti-parallel
Strand 7
B
204 206anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 310first strand
Strand 2
B
587 595anti-parallel
Strand 3
B
576 584anti-parallel
Strand 4
B
452 455parallel
Strand 5
B
474 478anti-parallel
Strand 6
B
412 413parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
658 660first strand
Strand 2
B
665 667anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
714 717first strand
Strand 2
B
723 726anti-parallel
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