Analysis of interatomic Contacts of Structural Units in PDB entry:
8T13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T13 entry

There are 2 chains in PDB entry 8T13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 140SER 457
B
 GLU 7MET 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8T13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 184Right-handed alpha
Helix 2
AA2
A
189 244Right-handed alpha
Helix 3
AA3
A
255 284Right-handed alpha
Helix 4
AA4
A
292 315Right-handed alpha
Helix 5
AA5
A
387 394Right-handed alpha
Helix 6
AA6
B
8 19Right-handed alpha
Helix 7
AA7
B
21 29Right-handed alpha
Helix 8
AA8
B
40 48Right-handed alpha
Helix 9
AA9
B
57 68Right-handed alpha
Helix 10
AB1
B
85 93Right-handed alpha
Helix 11
AB2
B
120 122Right-handed 310
Helix 12
AB3
B
131 135Right-handed 310
Helix 13
AB4
B
153 169Right-handed alpha
Helix 14
AB5
B
187 202Right-handed alpha
Helix 15
AB6
B
227 243Right-handed alpha
Helix 16
AB7
B
273 288Right-handed alpha
Helix 17
AB8
B
289 292Right-handed 310
Helix 18
AB9
B
329 333Right-handed 310
Helix 19
AC1
B
335 341Right-handed alpha
Helix 20
AC2
B
347 358Right-handed alpha
Helix 21
AC3
B
367 386Right-handed alpha
Helix 22
AC4
B
395 405Right-handed alpha
Helix 23
AC5
B
421 427Right-handed alpha
Helix 24
AC6
B
429 443Right-handed alpha
Helix 25
AC7
B
462 466Right-handed 310
Helix 26
AC8
B
478 490Right-handed alpha
Helix 27
AC9
B
490 495Right-handed alpha
Helix 28
AD1
B
511 513Right-handed 310
Helix 29
AD2
B
514 523Right-handed alpha
Helix 30
AD3
B
537 541Right-handed 310
Helix 31
AD4
B
543 551Right-handed alpha
Helix 32
AD5
B
552 557Right-handed 310
Helix 33
AD6
B
558 572Right-handed alpha
Helix 34
AD7
B
602 626Right-handed alpha
Helix 35
AD8
B
639 655Right-handed alpha
Helix 36
AD9
B
671 675Right-handed 310
Helix 37
AE1
B
678 685Right-handed alpha
Helix 38
AE2
B
730 739Right-handed alpha
Helix 39
AE3
B
748 759Right-handed alpha
Helix 40
AE4
B
759 765Right-handed alpha
Helix 41
AE5
B
769 783Right-handed alpha
Helix 42
AE6
B
801 805Right-handed 310
Helix 43
AE7
B
808 818Right-handed alpha
Helix 44
AE8
B
841 848Right-handed alpha
Helix 45
AE9
B
854 859Right-handed alpha
Helix 46
AF1
B
867 873Right-handed alpha
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There are 8 sheets in PDB entry 8T13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 323first strand
Strand 2
A
339 346anti-parallel
Strand 3
A
397 407anti-parallel
Strand 4
A
376 378anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
454 456parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 386first strand
Strand 2
A
357 363anti-parallel
Strand 3
A
431 439anti-parallel
Strand 4
A
442 449anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
251 253parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
97 103parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
177 182parallel
Strand 6
B
218 221anti-parallel
Strand 7
B
204 206anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
587 595anti-parallel
Strand 3
B
576 584anti-parallel
Strand 4
B
452 456parallel
Strand 5
B
473 477anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
658 660first strand
Strand 2
B
665 667anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
714 717first strand
Strand 2
B
723 726anti-parallel
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