Analysis of interatomic Contacts of Structural Units in PDB entry:
8T1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T1D entry

There are 4 chains in PDB entry 8T1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 148ASN 791
B
 VAL 148ASN 791
C
 VAL 148ASN 791
D
 VAL 148ASN 791
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are126 helices in PDB entry 8T1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 161Right-handed alpha
Helix 2
AA2
A
169 176Right-handed alpha
Helix 3
AA3
A
182 186Right-handed 310
Helix 4
AA4
A
193 201Right-handed alpha
Helix 5
AA5
A
208 221Right-handed alpha
Helix 6
AA6
A
222 227Right-handed alpha
Helix 7
AA7
A
240 248Right-handed alpha
Helix 8
AA8
A
250 260Right-handed alpha
Helix 9
AA9
A
287 295Right-handed alpha
Helix 10
AB1
A
297 307Right-handed alpha
Helix 11
AB2
A
323 330Right-handed alpha
Helix 12
AB3
A
337 356Right-handed alpha
Helix 13
AB4
A
361 365Right-handed 310
Helix 14
AB5
A
372 380Right-handed alpha
Helix 15
AB6
A
382 391Right-handed alpha
Helix 16
AB7
A
432 439Right-handed alpha
Helix 17
AB8
A
445 451Right-handed alpha
Helix 18
AB9
A
454 466Right-handed alpha
Helix 19
AC1
A
466 491Right-handed alpha
Helix 20
AC2
A
504 524Right-handed alpha
Helix 21
AC3
A
524 534Right-handed alpha
Helix 22
AC4
A
546 569Right-handed alpha
Helix 23
AC5
A
573 588Right-handed alpha
Helix 24
AC6
A
589 594Right-handed 310
Helix 25
AC7
A
596 613Right-handed alpha
Helix 26
AC8
A
613 632Right-handed alpha
Helix 27
AC9
A
656 660Right-handed 310
Helix 28
AD1
A
666 675Right-handed alpha
Helix 29
AD2
A
691 706Right-handed alpha
Helix 30
AD3
A
708 722Right-handed alpha
Helix 31
AD4
A
727 748Right-handed alpha
Helix 32
AD5
A
749 757Right-handed alpha
Helix 33
AD6
A
786 791Right-handed alpha
Helix 34
AD7
B
150 161Right-handed alpha
Helix 35
AD8
B
169 176Right-handed alpha
Helix 36
AD9
B
193 201Right-handed alpha
Helix 37
AE1
B
208 221Right-handed alpha
Helix 38
AE2
B
223 228Right-handed alpha
Helix 39
AE3
B
240 248Right-handed alpha
Helix 40
AE4
B
250 260Right-handed alpha
Helix 41
AE5
B
275 279Right-handed 310
Helix 42
AE6
B
287 295Right-handed alpha
Helix 43
AE7
B
297 304Right-handed alpha
Helix 44
AE8
B
323 331Right-handed alpha
Helix 45
AE9
B
337 356Right-handed alpha
Helix 46
AF1
B
374 380Right-handed alpha
Helix 47
AF2
B
383 391Right-handed alpha
Helix 48
AF3
B
432 437Right-handed alpha
Helix 49
AF4
B
445 450Right-handed alpha
Helix 50
AF5
B
453 464Right-handed alpha
Helix 51
AF6
B
466 491Right-handed alpha
Helix 52
AF7
B
504 530Right-handed alpha
Helix 53
AF8
B
548 569Right-handed alpha
Helix 54
AF9
B
573 590Right-handed alpha
Helix 55
AG1
B
596 602Right-handed alpha
Helix 56
AG2
B
604 633Right-handed alpha
Helix 57
AG3
B
664 679Right-handed alpha
Helix 58
AG4
B
691 705Right-handed alpha
Helix 59
AG5
B
706 721Right-handed alpha
Helix 60
AG6
B
721 728Right-handed alpha
Helix 61
AG7
B
728 746Right-handed alpha
Helix 62
AG8
B
749 756Right-handed alpha
Helix 63
AG9
B
785 791Right-handed alpha
Helix 64
AH1
C
150 161Right-handed alpha
Helix 65
AH2
C
169 176Right-handed alpha
Helix 66
AH3
C
182 186Right-handed 310
Helix 67
AH4
C
193 201Right-handed alpha
Helix 68
AH5
C
208 221Right-handed alpha
Helix 69
AH6
C
222 227Right-handed alpha
Helix 70
AH7
C
240 248Right-handed alpha
Helix 71
AH8
C
250 260Right-handed alpha
Helix 72
AH9
C
287 295Right-handed alpha
Helix 73
AI1
C
297 307Right-handed alpha
Helix 74
AI2
C
323 330Right-handed alpha
Helix 75
AI3
C
337 356Right-handed alpha
Helix 76
AI4
C
361 365Right-handed 310
Helix 77
AI5
C
372 380Right-handed alpha
Helix 78
AI6
C
382 391Right-handed alpha
Helix 79
AI7
C
432 439Right-handed alpha
Helix 80
AI8
C
445 451Right-handed alpha
Helix 81
AI9
C
454 466Right-handed alpha
Helix 82
AJ1
C
466 491Right-handed alpha
Helix 83
AJ2
C
504 524Right-handed alpha
Helix 84
AJ3
C
524 534Right-handed alpha
Helix 85
AJ4
C
546 569Right-handed alpha
Helix 86
AJ5
C
573 588Right-handed alpha
Helix 87
AJ6
C
589 594Right-handed 310
Helix 88
AJ7
C
596 613Right-handed alpha
Helix 89
AJ8
C
613 632Right-handed alpha
Helix 90
AJ9
C
656 660Right-handed 310
Helix 91
AK1
C
666 675Right-handed alpha
Helix 92
AK2
C
691 706Right-handed alpha
Helix 93
AK3
C
708 722Right-handed alpha
Helix 94
AK4
C
727 748Right-handed alpha
Helix 95
AK5
C
749 757Right-handed alpha
Helix 96
AK6
C
786 791Right-handed alpha
Helix 97
AK7
D
150 161Right-handed alpha
Helix 98
AK8
D
169 176Right-handed alpha
Helix 99
AK9
D
193 201Right-handed alpha
Helix 100
AL1
D
208 221Right-handed alpha
Helix 101
AL2
D
223 228Right-handed alpha
Helix 102
AL3
D
240 248Right-handed alpha
Helix 103
AL4
D
250 260Right-handed alpha
Helix 104
AL5
D
275 279Right-handed 310
Helix 105
AL6
D
287 295Right-handed alpha
Helix 106
AL7
D
297 304Right-handed alpha
Helix 107
AL8
D
323 331Right-handed alpha
Helix 108
AL9
D
337 356Right-handed alpha
Helix 109
AM1
D
374 380Right-handed alpha
Helix 110
AM2
D
383 391Right-handed alpha
Helix 111
AM3
D
432 437Right-handed alpha
Helix 112
AM4
D
445 450Right-handed alpha
Helix 113
AM5
D
453 464Right-handed alpha
Helix 114
AM6
D
466 491Right-handed alpha
Helix 115
AM7
D
504 530Right-handed alpha
Helix 116
AM8
D
548 569Right-handed alpha
Helix 117
AM9
D
573 590Right-handed alpha
Helix 118
AN1
D
596 602Right-handed alpha
Helix 119
AN2
D
604 633Right-handed alpha
Helix 120
AN3
D
664 679Right-handed alpha
Helix 121
AN4
D
691 705Right-handed alpha
Helix 122
AN5
D
706 721Right-handed alpha
Helix 123
AN6
D
721 728Right-handed alpha
Helix 124
AN7
D
728 746Right-handed alpha
Helix 125
AN8
D
749 756Right-handed alpha
Helix 126
AN9
D
785 791Right-handed alpha
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There are 4 sheets in PDB entry 8T1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 409first strand
Strand 2
A
416 420anti-parallel
Strand 3
A
774 781anti-parallel
Strand 4
A
760 763anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 407first strand
Strand 2
B
417 420anti-parallel
Strand 3
B
775 779anti-parallel
Strand 4
B
760 762anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 409first strand
Strand 2
C
416 420anti-parallel
Strand 3
C
774 781anti-parallel
Strand 4
C
760 763anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
406 407first strand
Strand 2
D
417 420anti-parallel
Strand 3
D
775 779anti-parallel
Strand 4
D
760 762anti-parallel
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