Analysis of interatomic Contacts of Structural Units in PDB entry:
8T1F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T1F entry

There are 4 chains in PDB entry 8T1F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 148	ASN 802
B	VAL 148	GLU 803
C	VAL 148	ASN 802
D	VAL 148	GLU 803

There are118 helices in PDB entry 8T1F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	161	Right-handed alpha
Helix 2	AA2	A	168	176	Right-handed alpha
Helix 3	AA3	A	182	186	Right-handed 310
Helix 4	AA4	A	193	201	Right-handed alpha
Helix 5	AA5	A	209	221	Right-handed alpha
Helix 6	AA6	A	241	248	Right-handed alpha
Helix 7	AA7	A	251	260	Right-handed alpha
Helix 8	AA8	A	275	279	Right-handed 310
Helix 9	AA9	A	287	293	Right-handed alpha
Helix 10	AB1	A	297	306	Right-handed alpha
Helix 11	AB2	A	323	331	Right-handed alpha
Helix 12	AB3	A	335	356	Right-handed alpha
Helix 13	AB4	A	372	380	Right-handed alpha
Helix 14	AB5	A	382	390	Right-handed alpha
Helix 15	AB6	A	432	439	Right-handed alpha
Helix 16	AB7	A	445	450	Right-handed alpha
Helix 17	AB8	A	454	465	Right-handed alpha
Helix 18	AB9	A	465	491	Right-handed alpha
Helix 19	AC1	A	507	533	Right-handed alpha
Helix 20	AC2	A	547	570	Right-handed alpha
Helix 21	AC3	A	573	586	Right-handed alpha
Helix 22	AC4	A	587	594	Right-handed 310
Helix 23	AC5	A	599	613	Right-handed alpha
Helix 24	AC6	A	617	626	Right-handed alpha
Helix 25	AC7	A	627	633	Right-handed alpha
Helix 26	AC8	A	665	679	Right-handed alpha
Helix 27	AC9	A	683	687	Right-handed 310
Helix 28	AD1	A	691	720	Right-handed alpha
Helix 29	AD2	A	725	748	Right-handed alpha
Helix 30	AD3	A	749	756	Right-handed alpha
Helix 31	AD4	B	150	160	Right-handed alpha
Helix 32	AD5	B	168	176	Right-handed alpha
Helix 33	AD6	B	182	186	Right-handed 310
Helix 34	AD7	B	193	201	Right-handed alpha
Helix 35	AD8	B	208	221	Right-handed alpha
Helix 36	AD9	B	240	248	Right-handed alpha
Helix 37	AE1	B	250	260	Right-handed alpha
Helix 38	AE2	B	287	295	Right-handed alpha
Helix 39	AE3	B	297	305	Right-handed alpha
Helix 40	AE4	B	325	331	Right-handed alpha
Helix 41	AE5	B	337	357	Right-handed alpha
Helix 42	AE6	B	374	380	Right-handed alpha
Helix 43	AE7	B	384	391	Right-handed alpha
Helix 44	AE8	B	399	403	Right-handed 310
Helix 45	AE9	B	432	440	Right-handed alpha
Helix 46	AF1	B	452	466	Right-handed alpha
Helix 47	AF2	B	468	479	Right-handed alpha
Helix 48	AF3	B	482	491	Right-handed alpha
Helix 49	AF4	B	504	535	Right-handed alpha
Helix 50	AF5	B	547	568	Right-handed alpha
Helix 51	AF6	B	575	588	Right-handed alpha
Helix 52	AF7	B	589	594	Right-handed 310
Helix 53	AF8	B	596	612	Right-handed alpha
Helix 54	AF9	B	614	625	Right-handed alpha
Helix 55	AG1	B	627	633	Right-handed alpha
Helix 56	AG2	B	665	678	Right-handed alpha
Helix 57	AG3	B	691	721	Right-handed alpha
Helix 58	AG4	B	724	748	Right-handed alpha
Helix 59	AG5	B	749	754	Right-handed alpha
Helix 60	AG6	C	150	161	Right-handed alpha
Helix 61	AG7	C	168	176	Right-handed alpha
Helix 62	AG8	C	182	186	Right-handed 310
Helix 63	AG9	C	193	201	Right-handed alpha
Helix 64	AH1	C	209	221	Right-handed alpha
Helix 65	AH2	C	241	248	Right-handed alpha
Helix 66	AH3	C	251	260	Right-handed alpha
Helix 67	AH4	C	275	279	Right-handed 310
Helix 68	AH5	C	287	293	Right-handed alpha
Helix 69	AH6	C	297	306	Right-handed alpha
Helix 70	AH7	C	323	331	Right-handed alpha
Helix 71	AH8	C	335	356	Right-handed alpha
Helix 72	AH9	C	372	380	Right-handed alpha
Helix 73	AI1	C	382	390	Right-handed alpha
Helix 74	AI2	C	432	439	Right-handed alpha
Helix 75	AI3	C	445	450	Right-handed alpha
Helix 76	AI4	C	454	465	Right-handed alpha
Helix 77	AI5	C	465	491	Right-handed alpha
Helix 78	AI6	C	507	533	Right-handed alpha
Helix 79	AI7	C	547	570	Right-handed alpha
Helix 80	AI8	C	573	586	Right-handed alpha
Helix 81	AI9	C	587	594	Right-handed 310
Helix 82	AJ1	C	599	613	Right-handed alpha
Helix 83	AJ2	C	617	626	Right-handed alpha
Helix 84	AJ3	C	627	633	Right-handed alpha
Helix 85	AJ4	C	665	679	Right-handed alpha
Helix 86	AJ5	C	683	687	Right-handed 310
Helix 87	AJ6	C	691	720	Right-handed alpha
Helix 88	AJ7	C	725	748	Right-handed alpha
Helix 89	AJ8	C	749	756	Right-handed alpha
Helix 90	AJ9	D	150	160	Right-handed alpha
Helix 91	AK1	D	168	176	Right-handed alpha
Helix 92	AK2	D	182	186	Right-handed 310
Helix 93	AK3	D	193	201	Right-handed alpha
Helix 94	AK4	D	208	221	Right-handed alpha
Helix 95	AK5	D	240	248	Right-handed alpha
Helix 96	AK6	D	250	260	Right-handed alpha
Helix 97	AK7	D	287	295	Right-handed alpha
Helix 98	AK8	D	297	305	Right-handed alpha
Helix 99	AK9	D	325	331	Right-handed alpha
Helix 100	AL1	D	337	357	Right-handed alpha
Helix 101	AL2	D	374	380	Right-handed alpha
Helix 102	AL3	D	384	391	Right-handed alpha
Helix 103	AL4	D	399	403	Right-handed 310
Helix 104	AL5	D	432	440	Right-handed alpha
Helix 105	AL6	D	452	466	Right-handed alpha
Helix 106	AL7	D	468	479	Right-handed alpha
Helix 107	AL8	D	482	491	Right-handed alpha
Helix 108	AL9	D	504	535	Right-handed alpha
Helix 109	AM1	D	547	568	Right-handed alpha
Helix 110	AM2	D	575	588	Right-handed alpha
Helix 111	AM3	D	589	594	Right-handed 310
Helix 112	AM4	D	596	612	Right-handed alpha
Helix 113	AM5	D	614	625	Right-handed alpha
Helix 114	AM6	D	627	633	Right-handed alpha
Helix 115	AM7	D	665	678	Right-handed alpha
Helix 116	AM8	D	691	721	Right-handed alpha
Helix 117	AM9	D	724	748	Right-handed alpha
Helix 118	AN1	D	749	754	Right-handed alpha

There are 8 sheets in PDB entry 8T1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	410	first strand
Strand 2	A	415	419	anti-parallel
Strand 3	A	778	782	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	766	first strand
Strand 2	A	772	774	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	415	419	anti-parallel
Strand 3	B	778	782	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	766	first strand
Strand 2	B	772	775	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	410	first strand
Strand 2	C	415	419	anti-parallel
Strand 3	C	778	782	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	763	766	first strand
Strand 2	C	772	774	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	410	first strand
Strand 2	D	415	419	anti-parallel
Strand 3	D	778	782	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	766	first strand
Strand 2	D	772	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T1F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T1F