Analysis of interatomic Contacts of Structural Units in PDB entry:
8T25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T25 entry

There are 2 chains in PDB entry 8T25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
B
 LEU 335LYS 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8T25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
146 155Right-handed alpha
Helix 6
AA6
A
157 194Right-handed alpha
Helix 7
AA7
A
198 205Right-handed alpha
Helix 8
AA8
A
219 252Right-handed alpha
Helix 9
AA9
A
263 267Right-handed 310
Helix 10
AB1
A
275 282Right-handed 310
Helix 11
AB2
A
293 301Right-handed alpha
Helix 12
AB3
A
303 319Right-handed alpha
Helix 13
AB4
A
324 331Right-handed alpha
Helix 14
AB5
A
365 385Right-handed alpha
Helix 15
AB6
A
389 393Right-handed 310
Helix 16
AB7
A
399 413Right-handed alpha
Helix 17
AB8
A
414 421Right-handed alpha
Helix 18
AB9
A
431 466Right-handed alpha
Helix 19
AC1
A
469 471Right-handed 310
Helix 20
AC2
A
472 485Right-handed alpha
Helix 21
AC3
A
498 502Right-handed 310
Helix 22
AC4
A
503 508Right-handed alpha
Helix 23
AC5
A
519 534Right-handed alpha
Helix 24
AC6
A
548 561Right-handed alpha
Helix 25
AC7
A
566 576Right-handed alpha
Helix 26
AC8
A
582 596Right-handed alpha
Helix 27
AC9
B
337 343Right-handed alpha
Helix 28
AD1
B
385 390Right-handed 310
Helix 29
AD2
B
404 410Right-handed 310
Helix 30
AD3
B
416 422Right-handed alpha
Helix 31
AD4
B
502 506Right-handed 310
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There are 3 sheets in PDB entry 8T25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
394 402anti-parallel
Strand 3
B
508 516anti-parallel
Strand 4
B
431 437anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il