Analysis of interatomic Contacts of Structural Units in PDB entry:
8T28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T28 entry

There is 1 chain in PDB entry 8T28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 82PRO 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8T28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 96Right-handed alpha
Helix 2
AA2
A
122 126Right-handed 310
Helix 3
AA3
A
141 144Right-handed 310
Helix 4
AA4
A
154 161Right-handed alpha
Helix 5
AA5
A
195 199Right-handed 310
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There are 3 sheets in PDB entry 8T28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
115 116anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
100 103anti-parallel
Strand 3
A
230 233anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 140first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
162 164parallel
Strand 4
A
177 184anti-parallel
Strand 5
A
239 246parallel
Strand 6
A
255 263anti-parallel
Strand 7
A
212 224anti-parallel
Strand 8
A
204 209anti-parallel
Strand 9
A
134 140anti-parallel
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