Analysis of interatomic Contacts of Structural Units in PDB entry:
8T2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T2J entry

There are 2 chains in PDB entry 8T2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 345
A
 ALA 347SER 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8T2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 126Right-handed alpha
Helix 2
AA2
A
134 157Right-handed alpha
Helix 3
AA3
A
221 231Right-handed alpha
Helix 4
AA4
A
258 265Right-handed alpha
Helix 5
AA5
A
278 281Right-handed 310
Helix 6
AA6
A
313 318Right-handed alpha
Helix 7
AA7
A
321 340Right-handed alpha
Helix 8
AA8
A
341 343Right-handed 310
Helix 9
AA9
A
345 361Right-handed alpha
Helix 10
AB1
A
394 398Right-handed 310
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There are 4 sheets in PDB entry 8T2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
368 376anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
391 393anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
96 107anti-parallel
Strand 3
A
172 173anti-parallel
Strand 4
A
275 276anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
96 107anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
184 190anti-parallel
Strand 5
A
295 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
241 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il