Analysis of interatomic Contacts of Structural Units in PDB entry:
8T2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T2T entry

There are 3 chains in PDB entry 8T2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 U 1 G 9
B
 G 1 U 638
D
 ASN 5CYS 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8T2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
6 11Right-handed alpha
Helix 2
AA2
D
12 27Right-handed alpha
Helix 3
AA3
D
36 38Right-handed 310
Helix 4
AA4
D
39 46Right-handed alpha
Helix 5
AA5
D
48 57Right-handed alpha
Helix 6
AA6
D
84 99Right-handed alpha
Helix 7
AA7
D
100 106Right-handed 310
Helix 8
AA8
D
118 131Right-handed alpha
Helix 9
AA9
D
144 148Right-handed 310
Helix 10
AB1
D
150 160Right-handed alpha
Helix 11
AB2
D
164 177Right-handed alpha
Helix 12
AB3
D
197 207Right-handed alpha
Helix 13
AB4
D
207 218Right-handed alpha
Helix 14
AB5
D
234 252Right-handed alpha
Helix 15
AB6
D
266 270Right-handed 310
Helix 16
AB7
D
291 306Right-handed alpha
Helix 17
AB8
D
313 332Right-handed alpha
Helix 18
AB9
D
337 361Right-handed alpha
Helix 19
AC1
D
362 373Right-handed alpha
Helix 20
AC2
D
376 385Right-handed alpha
Helix 21
AC3
D
389 396Right-handed alpha
Helix 22
AC4
D
398 403Right-handed alpha
Helix 23
AC5
D
404 412Right-handed alpha
Helix 24
AC6
D
415 424Right-handed alpha
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There are 2 sheets in PDB entry 8T2T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 223first strand
Strand 2
D
227 232anti-parallel
Strand 3
D
136 141anti-parallel
Strand 4
D
264 265anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 279first strand
Strand 2
D
286 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il