Analysis of interatomic Contacts of Structural Units in PDB entry:
8T3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T3P entry

There are 2 chains in PDB entry 8T3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ALA 480
B
 THR 4LEU 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 8T3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
50 55Right-handed 310
Helix 3
AA3
A
61 71Right-handed alpha
Helix 4
AA4
A
73 81Right-handed alpha
Helix 5
AA5
A
114 127Right-handed alpha
Helix 6
AA6
A
184 193Right-handed alpha
Helix 7
AA7
A
218 223Right-handed alpha
Helix 8
AA8
A
266 268Right-handed 310
Helix 9
AA9
A
269 276Right-handed alpha
Helix 10
AB1
A
280 287Right-handed alpha
Helix 11
AB2
A
308 311Right-handed 310
Helix 12
AB3
A
321 325Right-handed alpha
Helix 13
AB4
A
329 333Right-handed 310
Helix 14
AB5
A
334 355Right-handed alpha
Helix 15
AB6
A
361 376Right-handed alpha
Helix 16
AB7
A
376 388Right-handed alpha
Helix 17
AB8
A
399 404Right-handed alpha
Helix 18
AB9
A
406 424Right-handed alpha
Helix 19
AC1
A
424 436Right-handed alpha
Helix 20
AC2
A
440 445Right-handed 310
Helix 21
AC3
A
446 456Right-handed alpha
Helix 22
AC4
A
468 476Right-handed alpha
Helix 23
AC5
B
15 27Right-handed alpha
Helix 24
AC6
B
50 55Right-handed 310
Helix 25
AC7
B
61 71Right-handed alpha
Helix 26
AC8
B
73 81Right-handed alpha
Helix 27
AC9
B
114 127Right-handed alpha
Helix 28
AD1
B
184 192Right-handed alpha
Helix 29
AD2
B
218 223Right-handed alpha
Helix 30
AD3
B
266 268Right-handed 310
Helix 31
AD4
B
269 276Right-handed alpha
Helix 32
AD5
B
280 287Right-handed alpha
Helix 33
AD6
B
308 311Right-handed 310
Helix 34
AD7
B
321 325Right-handed alpha
Helix 35
AD8
B
329 333Right-handed 310
Helix 36
AD9
B
334 355Right-handed alpha
Helix 37
AE1
B
361 376Right-handed alpha
Helix 38
AE2
B
376 388Right-handed alpha
Helix 39
AE3
B
399 404Right-handed alpha
Helix 40
AE4
B
406 424Right-handed alpha
Helix 41
AE5
B
424 436Right-handed alpha
Helix 42
AE6
B
440 445Right-handed 310
Helix 43
AE7
B
446 456Right-handed alpha
Helix 44
AE8
B
468 475Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 8T3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
31 35parallel
Strand 3
A
8 12parallel
Strand 4
A
174 177parallel
Strand 5
A
318 320parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
108 112anti-parallel
Strand 3
A
84 88anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
225 229parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
250 257anti-parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
290 291anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
225 229parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
250 257anti-parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 146first strand
Strand 2
A
153 161anti-parallel
Strand 3
A
167 171anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
303 306anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
394 396anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 135first strand
Strand 2
B
31 35parallel
Strand 3
B
8 12parallel
Strand 4
B
174 177parallel
Strand 5
B
318 320parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
84 88anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
225 228parallel
Strand 4
B
239 246anti-parallel
Strand 5
B
250 257anti-parallel
Strand 6
B
207 214anti-parallel
Strand 7
B
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 146first strand
Strand 2
B
153 161anti-parallel
Strand 3
B
167 171anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
303 306anti-parallel
Strand 3
B
199 203anti-parallel
Strand 4
B
394 396anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il