Analysis of interatomic Contacts of Structural Units in PDB entry:
8T3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T3U entry

There are 2 chains in PDB entry 8T3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 404ASP 890
B
 PRO 403ASP 890
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8T3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
404 432Right-handed alpha
Helix 2
AA2
A
436 455Right-handed alpha
Helix 3
AA3
A
465 482Right-handed alpha
Helix 4
AA4
A
485 507Right-handed alpha
Helix 5
AA5
A
509 513Right-handed 310
Helix 6
AA6
A
517 547Right-handed alpha
Helix 7
AA7
A
569 593Right-handed alpha
Helix 8
AA8
A
598 608Right-handed alpha
Helix 9
AA9
A
608 623Right-handed alpha
Helix 10
AB1
A
660 667Right-handed alpha
Helix 11
AB2
A
667 687Right-handed alpha
Helix 12
AB3
A
702 719Right-handed alpha
Helix 13
AB4
A
753 773Right-handed alpha
Helix 14
AB5
A
776 781Right-handed alpha
Helix 15
AB6
A
784 799Right-handed alpha
Helix 16
AB7
A
803 811Right-handed alpha
Helix 17
AB8
A
815 819Right-handed 310
Helix 18
AB9
A
822 827Right-handed alpha
Helix 19
AC1
A
829 853Right-handed alpha
Helix 20
AC2
A
855 857Right-handed 310
Helix 21
AC3
A
858 865Right-handed alpha
Helix 22
AC4
A
865 872Right-handed alpha
Helix 23
AC5
A
873 878Right-handed alpha
Helix 24
AC6
A
879 887Right-handed alpha
Helix 25
AC7
B
404 431Right-handed alpha
Helix 26
AC8
B
436 455Right-handed alpha
Helix 27
AC9
B
465 483Right-handed alpha
Helix 28
AD1
B
485 507Right-handed alpha
Helix 29
AD2
B
509 513Right-handed 310
Helix 30
AD3
B
517 547Right-handed alpha
Helix 31
AD4
B
569 593Right-handed alpha
Helix 32
AD5
B
598 608Right-handed alpha
Helix 33
AD6
B
608 623Right-handed alpha
Helix 34
AD7
B
660 667Right-handed alpha
Helix 35
AD8
B
667 686Right-handed alpha
Helix 36
AD9
B
703 719Right-handed alpha
Helix 37
AE1
B
754 773Right-handed alpha
Helix 38
AE2
B
776 781Right-handed alpha
Helix 39
AE3
B
784 799Right-handed alpha
Helix 40
AE4
B
803 811Right-handed alpha
Helix 41
AE5
B
812 814Right-handed 310
Helix 42
AE6
B
815 819Right-handed 310
Helix 43
AE7
B
822 827Right-handed alpha
Helix 44
AE8
B
829 853Right-handed alpha
Helix 45
AE9
B
858 865Right-handed alpha
Helix 46
AF1
B
865 873Right-handed alpha
Helix 47
AF2
B
873 878Right-handed alpha
Helix 48
AF3
B
879 887Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8T3U. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 463first strand
Strand 2
A
725 728anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
725 727anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il