Analysis of interatomic Contacts of Structural Units in PDB entry:
8T41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T41 entry

There is 1 chain in PDB entry 8T41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8T41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
134 138Right-handed 310
Helix 3
AA3
A
186 190Right-handed 310
Helix 4
AA4
A
218 225Right-handed 310
Helix 5
AA5
A
226 246Right-handed alpha
Helix 6
AA6
A
278 280Right-handed 310
Helix 7
AA7
A
286 303Right-handed alpha
Helix 8
AA8
A
314 317Right-handed 310
Helix 9
AA9
A
318 337Right-handed alpha
Helix 10
AB1
A
341 349Right-handed alpha
Helix 11
AB2
A
349 360Right-handed alpha
Helix 12
AB3
A
372 378Right-handed alpha
Helix 13
AB4
A
385 400Right-handed alpha
Helix 14
AB5
A
400 416Right-handed alpha
Helix 15
AB6
A
421 434Right-handed alpha
Helix 16
AB7
A
437 446Right-handed alpha
Helix 17
AB8
A
521 524Right-handed 310
Helix 18
AB9
A
535 539Right-handed 310
Helix 19
AC1
A
547 558Right-handed alpha
Helix 20
AC2
A
559 561Right-handed 310
Helix 21
AC3
A
563 580Right-handed alpha
Helix 22
AC4
A
584 596Right-handed alpha
Helix 23
AC5
A
597 599Right-handed 310
Helix 24
AC6
A
601 619Right-handed alpha
Helix 25
AC7
A
621 628Right-handed alpha
Helix 26
AC8
A
628 644Right-handed alpha
Helix 27
AC9
A
648 660Right-handed alpha
Helix 28
AD1
A
664 675Right-handed alpha
Helix 29
AD2
A
678 683Right-handed 310
Helix 30
AD3
A
690 704Right-handed alpha
Helix 31
AD4
A
714 724Right-handed alpha
Helix 32
AD5
A
726 739Right-handed alpha
Helix 33
AD6
A
742 756Right-handed alpha
Helix 34
AD7
A
760 772Right-handed alpha
Helix 35
AD8
A
776 781Right-handed alpha
Helix 36
AD9
A
782 798Right-handed alpha
Helix 37
AE1
A
799 810Right-handed alpha
Helix 38
AE2
A
817 829Right-handed alpha
Helix 39
AE3
A
834 860Right-handed alpha
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There are 7 sheets in PDB entry 8T41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
95 105anti-parallel
Strand 4
A
40 51anti-parallel
Strand 5
A
18 28anti-parallel
Strand 6
A
150 156parallel
Strand 7
A
176 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
87 89anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
162 165anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 206first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
254 259parallel
Strand 4
A
272 276parallel
Strand 5
A
266 267anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
418 420parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
465 472anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
A
543 544parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 513first strand
Strand 2
A
485 494anti-parallel
Strand 3
A
531 533anti-parallel
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