Analysis of interatomic Contacts of Structural Units in PDB entry:
8T46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T46 entry

There are 2 chains in PDB entry 8T46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173GLN 741
B
 GLN 131GLN 681
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8T46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 181Right-handed alpha
Helix 2
AA2
A
183 202Right-handed alpha
Helix 3
AA3
A
202 217Right-handed alpha
Helix 4
AA4
A
220 270Right-handed alpha
Helix 5
AA5
A
278 280Right-handed 310
Helix 6
AA6
A
281 324Right-handed alpha
Helix 7
AA7
A
324 340Right-handed alpha
Helix 8
AA8
A
340 373Right-handed alpha
Helix 9
AA9
A
373 381Right-handed alpha
Helix 10
AB1
A
382 421Right-handed alpha
Helix 11
AB2
A
421 437Right-handed alpha
Helix 12
AB3
A
440 462Right-handed alpha
Helix 13
AB4
A
464 484Right-handed alpha
Helix 14
AB5
A
543 552Right-handed alpha
Helix 15
AB6
A
573 580Right-handed alpha
Helix 16
AB7
A
594 599Right-handed alpha
Helix 17
AB8
A
608 619Right-handed alpha
Helix 18
AB9
A
621 627Right-handed alpha
Helix 19
AC1
A
630 634Right-handed 310
Helix 20
AC2
A
637 641Right-handed 310
Helix 21
AC3
A
644 660Right-handed alpha
Helix 22
AC4
A
674 687Right-handed alpha
Helix 23
AC5
A
688 694Right-handed 310
Helix 24
AC6
A
702 708Right-handed alpha
Helix 25
AC7
A
725 733Right-handed alpha
Helix 26
AC8
A
734 741Right-handed alpha
Helix 27
AC9
B
132 146Right-handed alpha
Helix 28
AD1
B
148 167Right-handed alpha
Helix 29
AD2
B
167 181Right-handed alpha
Helix 30
AD3
B
185 234Right-handed alpha
Helix 31
AD4
B
237 244Right-handed alpha
Helix 32
AD5
B
245 262Right-handed alpha
Helix 33
AD6
B
262 289Right-handed alpha
Helix 34
AD7
B
289 298Right-handed alpha
Helix 35
AD8
B
299 346Right-handed alpha
Helix 36
AD9
B
348 402Right-handed alpha
Helix 37
AE1
B
405 437Right-handed alpha
Helix 38
AE2
B
440 448Right-handed alpha
Helix 39
AE3
B
509 515Right-handed alpha
Helix 40
AE4
B
516 518Right-handed 310
Helix 41
AE5
B
535 537Right-handed 310
Helix 42
AE6
B
538 545Right-handed alpha
Helix 43
AE7
B
559 565Right-handed alpha
Helix 44
AE8
B
573 583Right-handed alpha
Helix 45
AE9
B
586 592Right-handed alpha
Helix 46
AF1
B
608 623Right-handed alpha
Helix 47
AF2
B
632 637Right-handed alpha
Helix 48
AF3
B
638 647Right-handed alpha
Helix 49
AF4
B
648 652Right-handed 310
Helix 50
AF5
B
662 668Right-handed 310
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There are 4 sheets in PDB entry 8T46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 548first strand
Strand 2
B
627 631parallel
Strand 3
B
655 660parallel
Strand 4
B
499 502parallel
Strand 5
B
671 674parallel
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