Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4C entry

There are 2 chains in PDB entry 8T4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19LEU 162
B
 LYS 23LEU 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8T4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
69 81Right-handed alpha
Helix 4
AA4
A
95 107Right-handed alpha
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
150 162Right-handed alpha
Helix 7
AA7
B
46 50Right-handed 310
Helix 8
AA8
B
64 68Right-handed 310
Helix 9
AA9
B
69 81Right-handed alpha
Helix 10
AB1
B
95 107Right-handed alpha
Helix 11
AB2
B
119 125Right-handed alpha
Helix 12
AB3
B
150 161Right-handed alpha
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There are 2 sheets in PDB entry 8T4C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
37 38anti-parallel
Strand 3
A
112 116anti-parallel
Strand 4
A
85 91parallel
Strand 5
A
54 60parallel
Strand 6
A
132 137anti-parallel
Strand 7
A
140 146anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
37 38anti-parallel
Strand 3
B
112 116anti-parallel
Strand 4
B
85 91parallel
Strand 5
B
54 60parallel
Strand 6
B
132 137anti-parallel
Strand 7
B
140 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il