Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4E entry

There are 3 chains in PDB entry 8T4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 183ALA 742
B
 GLN 131GLN 681
C
 ILE 1VAL 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8T4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 202Right-handed alpha
Helix 2
AA2
A
202 217Right-handed alpha
Helix 3
AA3
A
220 270Right-handed alpha
Helix 4
AA4
A
289 324Right-handed alpha
Helix 5
AA5
A
324 373Right-handed alpha
Helix 6
AA6
A
373 381Right-handed alpha
Helix 7
AA7
A
382 437Right-handed alpha
Helix 8
AA8
A
440 476Right-handed alpha
Helix 9
AA9
A
539 542Right-handed 310
Helix 10
AB1
A
543 552Right-handed alpha
Helix 11
AB2
A
573 581Right-handed alpha
Helix 12
AB3
A
608 619Right-handed alpha
Helix 13
AB4
A
621 628Right-handed alpha
Helix 14
AB5
A
630 634Right-handed 310
Helix 15
AB6
A
637 641Right-handed 310
Helix 16
AB7
A
644 658Right-handed alpha
Helix 17
AB8
A
674 686Right-handed alpha
Helix 18
AB9
A
688 694Right-handed 310
Helix 19
AC1
A
702 708Right-handed alpha
Helix 20
AC2
A
725 732Right-handed alpha
Helix 21
AC3
A
734 742Right-handed alpha
Helix 22
AC4
B
132 146Right-handed alpha
Helix 23
AC5
B
148 182Right-handed alpha
Helix 24
AC6
B
185 234Right-handed alpha
Helix 25
AC7
B
237 244Right-handed alpha
Helix 26
AC8
B
245 255Right-handed alpha
Helix 27
AC9
B
255 260Right-handed alpha
Helix 28
AD1
B
261 263Right-handed 310
Helix 29
AD2
B
266 289Right-handed alpha
Helix 30
AD3
B
289 338Right-handed alpha
Helix 31
AD4
B
338 346Right-handed alpha
Helix 32
AD5
B
347 400Right-handed alpha
Helix 33
AD6
B
405 448Right-handed alpha
Helix 34
AD7
B
509 516Right-handed alpha
Helix 35
AD8
B
535 537Right-handed 310
Helix 36
AD9
B
538 545Right-handed alpha
Helix 37
AE1
B
559 565Right-handed alpha
Helix 38
AE2
B
572 583Right-handed alpha
Helix 39
AE3
B
585 592Right-handed alpha
Helix 40
AE4
B
594 598Right-handed 310
Helix 41
AE5
B
608 622Right-handed alpha
Helix 42
AE6
B
638 646Right-handed alpha
Helix 43
AE7
B
647 652Right-handed 310
Helix 44
AE8
B
663 668Right-handed 310
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There are 6 sheets in PDB entry 8T4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
503 506anti-parallel
Strand 3
A
561 564anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
519 524anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 537first strand
Strand 2
A
711 716parallel
Strand 3
A
719 722anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 664first strand
Strand 2
A
695 696parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 493first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il