Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4F entry

There are 3 chains in PDB entry 8T4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 180ALA 742
B
 GLN 131GLN 681
C
 ARG 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8T4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
180 182Right-handed 310
Helix 2
AA2
A
183 201Right-handed alpha
Helix 3
AA3
A
203 216Right-handed alpha
Helix 4
AA4
A
221 272Right-handed alpha
Helix 5
AA5
A
289 324Right-handed alpha
Helix 6
AA6
A
324 338Right-handed alpha
Helix 7
AA7
A
340 372Right-handed alpha
Helix 8
AA8
A
373 381Right-handed alpha
Helix 9
AA9
A
382 437Right-handed alpha
Helix 10
AB1
A
440 484Right-handed alpha
Helix 11
AB2
A
515 519Right-handed 310
Helix 12
AB3
A
539 544Right-handed 310
Helix 13
AB4
A
545 552Right-handed alpha
Helix 14
AB5
A
568 572Right-handed 310
Helix 15
AB6
A
573 578Right-handed alpha
Helix 16
AB7
A
594 599Right-handed alpha
Helix 17
AB8
A
608 619Right-handed alpha
Helix 18
AB9
A
621 628Right-handed alpha
Helix 19
AC1
A
630 634Right-handed 310
Helix 20
AC2
A
637 641Right-handed 310
Helix 21
AC3
A
644 658Right-handed alpha
Helix 22
AC4
A
668 673Right-handed alpha
Helix 23
AC5
A
674 687Right-handed alpha
Helix 24
AC6
A
690 694Right-handed 310
Helix 25
AC7
A
702 707Right-handed alpha
Helix 26
AC8
A
725 731Right-handed alpha
Helix 27
AC9
A
734 742Right-handed alpha
Helix 28
AD1
B
132 145Right-handed alpha
Helix 29
AD2
B
148 168Right-handed alpha
Helix 30
AD3
B
168 181Right-handed alpha
Helix 31
AD4
B
186 234Right-handed alpha
Helix 32
AD5
B
237 244Right-handed alpha
Helix 33
AD6
B
245 255Right-handed alpha
Helix 34
AD7
B
255 260Right-handed alpha
Helix 35
AD8
B
261 263Right-handed 310
Helix 36
AD9
B
266 289Right-handed alpha
Helix 37
AE1
B
291 338Right-handed alpha
Helix 38
AE2
B
338 346Right-handed alpha
Helix 39
AE3
B
347 402Right-handed alpha
Helix 40
AE4
B
405 448Right-handed alpha
Helix 41
AE5
B
504 507Right-handed 310
Helix 42
AE6
B
508 516Right-handed alpha
Helix 43
AE7
B
535 537Right-handed 310
Helix 44
AE8
B
538 545Right-handed alpha
Helix 45
AE9
B
559 565Right-handed alpha
Helix 46
AF1
B
572 582Right-handed alpha
Helix 47
AF2
B
585 590Right-handed alpha
Helix 48
AF3
B
594 598Right-handed 310
Helix 49
AF4
B
608 622Right-handed alpha
Helix 50
AF5
B
633 636Right-handed 310
Helix 51
AF6
B
638 646Right-handed alpha
Helix 52
AF7
B
648 653Right-handed alpha
Helix 53
AF8
B
662 668Right-handed 310
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There are 6 sheets in PDB entry 8T4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
527 528anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 509first strand
Strand 2
A
559 561anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
712 716parallel
Strand 3
A
719 724anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 664first strand
Strand 2
A
695 696parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 548first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
499 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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