Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4G entry

There are 3 chains in PDB entry 8T4G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 183ALA 742
B
 GLN 131GLN 681
C
 GLN 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 8T4G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 202Right-handed alpha
Helix 2
AA2
A
202 218Right-handed alpha
Helix 3
AA3
A
220 270Right-handed alpha
Helix 4
AA4
A
289 324Right-handed alpha
Helix 5
AA5
A
324 340Right-handed alpha
Helix 6
AA6
A
340 373Right-handed alpha
Helix 7
AA7
A
373 380Right-handed alpha
Helix 8
AA8
A
382 437Right-handed alpha
Helix 9
AA9
A
440 476Right-handed alpha
Helix 10
AB1
A
543 545Right-handed 310
Helix 11
AB2
A
546 552Right-handed alpha
Helix 12
AB3
A
568 572Right-handed 310
Helix 13
AB4
A
573 581Right-handed alpha
Helix 14
AB5
A
594 599Right-handed alpha
Helix 15
AB6
A
608 619Right-handed alpha
Helix 16
AB7
A
621 626Right-handed alpha
Helix 17
AB8
A
630 634Right-handed 310
Helix 18
AB9
A
637 641Right-handed 310
Helix 19
AC1
A
644 660Right-handed alpha
Helix 20
AC2
A
674 688Right-handed alpha
Helix 21
AC3
A
689 694Right-handed alpha
Helix 22
AC4
A
703 709Right-handed alpha
Helix 23
AC5
A
725 732Right-handed alpha
Helix 24
AC6
A
734 741Right-handed alpha
Helix 25
AC7
B
133 145Right-handed alpha
Helix 26
AC8
B
148 181Right-handed alpha
Helix 27
AC9
B
188 234Right-handed alpha
Helix 28
AD1
B
237 244Right-handed alpha
Helix 29
AD2
B
245 255Right-handed alpha
Helix 30
AD3
B
255 260Right-handed alpha
Helix 31
AD4
B
261 263Right-handed 310
Helix 32
AD5
B
266 289Right-handed alpha
Helix 33
AD6
B
289 338Right-handed alpha
Helix 34
AD7
B
338 346Right-handed alpha
Helix 35
AD8
B
347 402Right-handed alpha
Helix 36
AD9
B
405 449Right-handed alpha
Helix 37
AE1
B
504 508Right-handed 310
Helix 38
AE2
B
509 517Right-handed alpha
Helix 39
AE3
B
535 537Right-handed 310
Helix 40
AE4
B
538 545Right-handed alpha
Helix 41
AE5
B
559 565Right-handed alpha
Helix 42
AE6
B
572 583Right-handed alpha
Helix 43
AE7
B
585 590Right-handed alpha
Helix 44
AE8
B
594 598Right-handed 310
Helix 45
AE9
B
601 605Right-handed 310
Helix 46
AF1
B
608 622Right-handed alpha
Helix 47
AF2
B
633 636Right-handed 310
Helix 48
AF3
B
638 646Right-handed alpha
Helix 49
AF4
B
648 653Right-handed alpha
Helix 50
AF5
B
662 668Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 8T4G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
506 510anti-parallel
Strand 3
A
559 561anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
695 698parallel
Strand 3
A
663 664parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 716first strand
Strand 2
A
719 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 548first strand
Strand 2
B
627 631parallel
Strand 3
B
655 660parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il