Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4H entry

There are 3 chains in PDB entry 8T4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 182ALA 742
B
 GLN 131LEU 680
C
 ARG 1LEU 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8T4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 202Right-handed alpha
Helix 2
AA2
A
202 218Right-handed alpha
Helix 3
AA3
A
220 250Right-handed alpha
Helix 4
AA4
A
252 270Right-handed alpha
Helix 5
AA5
A
292 323Right-handed alpha
Helix 6
AA6
A
324 373Right-handed alpha
Helix 7
AA7
A
373 381Right-handed alpha
Helix 8
AA8
A
382 437Right-handed alpha
Helix 9
AA9
A
440 482Right-handed alpha
Helix 10
AB1
A
539 542Right-handed 310
Helix 11
AB2
A
543 552Right-handed alpha
Helix 12
AB3
A
573 581Right-handed alpha
Helix 13
AB4
A
594 599Right-handed alpha
Helix 14
AB5
A
608 619Right-handed alpha
Helix 15
AB6
A
621 628Right-handed alpha
Helix 16
AB7
A
630 634Right-handed 310
Helix 17
AB8
A
637 641Right-handed 310
Helix 18
AB9
A
644 659Right-handed alpha
Helix 19
AC1
A
674 687Right-handed alpha
Helix 20
AC2
A
702 709Right-handed 310
Helix 21
AC3
A
725 732Right-handed alpha
Helix 22
AC4
A
734 742Right-handed alpha
Helix 23
AC5
B
132 146Right-handed alpha
Helix 24
AC6
B
148 182Right-handed alpha
Helix 25
AC7
B
185 235Right-handed alpha
Helix 26
AC8
B
237 244Right-handed alpha
Helix 27
AC9
B
245 261Right-handed alpha
Helix 28
AD1
B
266 289Right-handed alpha
Helix 29
AD2
B
289 338Right-handed alpha
Helix 30
AD3
B
338 346Right-handed alpha
Helix 31
AD4
B
347 402Right-handed alpha
Helix 32
AD5
B
405 448Right-handed alpha
Helix 33
AD6
B
509 517Right-handed alpha
Helix 34
AD7
B
533 537Right-handed 310
Helix 35
AD8
B
538 545Right-handed alpha
Helix 36
AD9
B
559 565Right-handed alpha
Helix 37
AE1
B
572 583Right-handed alpha
Helix 38
AE2
B
586 591Right-handed alpha
Helix 39
AE3
B
594 598Right-handed 310
Helix 40
AE4
B
601 605Right-handed 310
Helix 41
AE5
B
608 623Right-handed alpha
Helix 42
AE6
B
632 637Right-handed alpha
Helix 43
AE7
B
638 646Right-handed alpha
Helix 44
AE8
B
648 653Right-handed alpha
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There are 6 sheets in PDB entry 8T4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
527 528anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
559 564anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
696 698parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 716first strand
Strand 2
A
719 724anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 493first strand
Strand 2
B
468 476anti-parallel
Strand 3
B
524 529anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 674parallel
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