Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4J entry

There are 3 chains in PDB entry 8T4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 135GLN 681
A
 VAL 173GLN 741
C
 LEU 1TYR 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8T4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
136 145Right-handed alpha
Helix 2
AA2
B
148 167Right-handed alpha
Helix 3
AA3
B
168 181Right-handed alpha
Helix 4
AA4
B
185 234Right-handed alpha
Helix 5
AA5
B
237 244Right-handed alpha
Helix 6
AA6
B
245 255Right-handed alpha
Helix 7
AA7
B
255 260Right-handed alpha
Helix 8
AA8
B
266 289Right-handed alpha
Helix 9
AA9
B
289 338Right-handed alpha
Helix 10
AB1
B
338 344Right-handed alpha
Helix 11
AB2
B
347 402Right-handed alpha
Helix 12
AB3
B
405 448Right-handed alpha
Helix 13
AB4
B
504 508Right-handed 310
Helix 14
AB5
B
509 517Right-handed alpha
Helix 15
AB6
B
535 537Right-handed 310
Helix 16
AB7
B
538 543Right-handed alpha
Helix 17
AB8
B
560 565Right-handed alpha
Helix 18
AB9
B
572 583Right-handed alpha
Helix 19
AC1
B
585 590Right-handed alpha
Helix 20
AC2
B
594 597Right-handed 310
Helix 21
AC3
B
601 605Right-handed 310
Helix 22
AC4
B
608 622Right-handed alpha
Helix 23
AC5
B
633 636Right-handed 310
Helix 24
AC6
B
638 647Right-handed alpha
Helix 25
AC7
B
648 653Right-handed alpha
Helix 26
AC8
B
662 668Right-handed 310
Helix 27
AC9
A
177 182Right-handed 310
Helix 28
AD1
A
183 202Right-handed alpha
Helix 29
AD2
A
202 218Right-handed alpha
Helix 30
AD3
A
222 269Right-handed alpha
Helix 31
AD4
A
286 324Right-handed alpha
Helix 32
AD5
A
324 373Right-handed alpha
Helix 33
AD6
A
373 381Right-handed alpha
Helix 34
AD7
A
382 436Right-handed alpha
Helix 35
AD8
A
440 476Right-handed alpha
Helix 36
AD9
A
477 483Right-handed alpha
Helix 37
AE1
A
515 517Right-handed 310
Helix 38
AE2
A
543 552Right-handed alpha
Helix 39
AE3
A
568 572Right-handed 310
Helix 40
AE4
A
573 581Right-handed alpha
Helix 41
AE5
A
608 619Right-handed alpha
Helix 42
AE6
A
621 626Right-handed alpha
Helix 43
AE7
A
630 634Right-handed 310
Helix 44
AE8
A
637 641Right-handed 310
Helix 45
AE9
A
644 660Right-handed alpha
Helix 46
AF1
A
669 672Right-handed 310
Helix 47
AF2
A
674 688Right-handed alpha
Helix 48
AF3
A
689 694Right-handed alpha
Helix 49
AF4
A
702 709Right-handed alpha
Helix 50
AF5
A
725 732Right-handed alpha
Helix 51
AF6
A
734 739Right-handed alpha
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There are 6 sheets in PDB entry 8T4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
492 493anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
532 533anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
627 631parallel
Strand 3
B
655 659parallel
Strand 4
B
498 502parallel
Strand 5
B
671 676parallel
Strand 6
B
679 680anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
599 600anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
503 511anti-parallel
Strand 3
A
559 564anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 536parallel
Strand 5
A
711 716parallel
Strand 6
A
719 723anti-parallel
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