Analysis of interatomic Contacts of Structural Units in PDB entry:
8T4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T4R entry

There are 3 chains in PDB entry 8T4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 413ALA 487
D
 ALA 1THR 3
D
 GLN 5LYS 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 8T4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
457 460Right-handed 310
Helix 2
AA2
A
462 472Right-handed alpha
Helix 3
AA3
A
481 487Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8T4R.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
443 446anti-parallel
Strand 3
D
3 4anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il