Analysis of interatomic Contacts of Structural Units in PDB entry:
8T53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T53 entry

There are 2 chains in PDB entry 8T53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ARG 471
B
 LYS 7ARG 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8T53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 41Right-handed alpha
Helix 2
AA2
A
48 72Right-handed alpha
Helix 3
AA3
A
82 107Right-handed alpha
Helix 4
AA4
A
114 142Right-handed alpha
Helix 5
AA5
A
155 167Right-handed alpha
Helix 6
AA6
A
168 171Right-handed 310
Helix 7
AA7
A
197 204Right-handed alpha
Helix 8
AA8
A
216 218Right-handed 310
Helix 9
AA9
A
219 233Right-handed alpha
Helix 10
AB1
A
269 272Right-handed 310
Helix 11
AB2
A
273 307Right-handed alpha
Helix 12
AB3
A
308 310Right-handed 310
Helix 13
AB4
A
322 324Right-handed 310
Helix 14
AB5
A
376 380Right-handed alpha
Helix 15
AB6
A
381 384Right-handed 310
Helix 16
AB7
A
385 393Right-handed alpha
Helix 17
AB8
A
404 413Right-handed 310
Helix 18
AB9
A
414 421Right-handed alpha
Helix 19
AC1
A
427 432Right-handed alpha
Helix 20
AC2
A
439 452Right-handed alpha
Helix 21
AC3
A
454 471Right-handed alpha
Helix 22
AC4
B
9 41Right-handed alpha
Helix 23
AC5
B
50 72Right-handed alpha
Helix 24
AC6
B
82 107Right-handed alpha
Helix 25
AC7
B
114 142Right-handed alpha
Helix 26
AC8
B
155 167Right-handed alpha
Helix 27
AC9
B
168 171Right-handed 310
Helix 28
AD1
B
196 203Right-handed alpha
Helix 29
AD2
B
216 218Right-handed 310
Helix 30
AD3
B
219 233Right-handed alpha
Helix 31
AD4
B
269 272Right-handed 310
Helix 32
AD5
B
273 307Right-handed alpha
Helix 33
AD6
B
308 310Right-handed 310
Helix 34
AD7
B
322 324Right-handed 310
Helix 35
AD8
B
376 380Right-handed alpha
Helix 36
AD9
B
381 384Right-handed 310
Helix 37
AE1
B
385 393Right-handed alpha
Helix 38
AE2
B
404 413Right-handed 310
Helix 39
AE3
B
414 421Right-handed alpha
Helix 40
AE4
B
427 432Right-handed alpha
Helix 41
AE5
B
439 452Right-handed alpha
Helix 42
AE6
B
454 471Right-handed alpha
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There are 7 sheets in PDB entry 8T53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
173 179parallel
Strand 4
A
147 152parallel
Strand 5
A
210 213parallel
Strand 6
A
238 240parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 320first strand
Strand 2
A
326 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
424 426parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 179first strand
Strand 2
B
147 152parallel
Strand 3
B
210 213parallel
Strand 4
B
238 240parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
191 192anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 320first strand
Strand 2
B
326 332anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
424 426parallel
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