Analysis of interatomic Contacts of Structural Units in PDB entry:
8T58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T58 entry

There are 6 chains in PDB entry 8T58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	SER 137
B	MET 4	GLU 231
C	GLU 1	CYS 240
D	GLN 3	SER 137
E	MET 4	CYS 232
F	GLU -2	CYS 240

There are 27 helices in PDB entry 8T58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	72	Right-handed 310
Helix 2	AA2	A	95	99	Right-handed 310
Helix 3	AA3	A	118	122	Right-handed 310
Helix 4	AA4	B	95	99	Right-handed 310
Helix 5	AA5	B	139	144	Right-handed alpha
Helix 6	AA6	B	201	206	Right-handed alpha
Helix 7	AA7	C	29	31	Right-handed 310
Helix 8	AA8	C	82	84	Right-handed 310
Helix 9	AA9	C	95	99	Right-handed 310
Helix 10	AB1	C	110	115	Right-handed alpha
Helix 11	AB2	C	180	182	Right-handed 310
Helix 12	AB3	C	211	215	Right-handed 310
Helix 13	AB4	C	225	228	Right-handed 310
Helix 14	AB5	D	69	72	Right-handed 310
Helix 15	AB6	D	95	99	Right-handed 310
Helix 16	AB7	D	112	116	Right-handed 310
Helix 17	AB8	D	118	122	Right-handed 310
Helix 18	AB9	E	95	99	Right-handed 310
Helix 19	AC1	E	139	145	Right-handed alpha
Helix 20	AC2	E	201	205	Right-handed alpha
Helix 21	AC3	F	29	31	Right-handed 310
Helix 22	AC4	F	82	84	Right-handed 310
Helix 23	AC5	F	95	99	Right-handed 310
Helix 24	AC6	F	110	115	Right-handed alpha
Helix 25	AC7	F	180	182	Right-handed 310
Helix 26	AC8	F	211	216	Right-handed alpha
Helix 27	AC9	F	225	228	Right-handed 310

There are 24 sheets in PDB entry 8T58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	76	81	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	131	135	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	34	44	anti-parallel
Strand 5	A	51	57	anti-parallel
Strand 6	A	63	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	131	135	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	126	127	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	120	124	parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	40	44	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	66	67	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	120	124	parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	113	116	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	83	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	19	22	anti-parallel
Strand 4	E	171	174	parallel
Strand 5	E	163	168	anti-parallel
Strand 6	E	209	215	anti-parallel
Strand 7	E	223	228	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	147	157	anti-parallel
Strand 3	B	191	200	anti-parallel
Strand 4	B	177	181	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	228	first strand
Strand 2	B	209	215	anti-parallel
Strand 3	B	163	168	anti-parallel
Strand 4	B	171	174	anti-parallel
Strand 5	E	18	22	parallel
Strand 6	E	86	91	anti-parallel
Strand 7	E	76	83	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	76	81	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	131	135	parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	33	44	anti-parallel
Strand 5	C	50	57	anti-parallel
Strand 6	C	62	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	159	169	anti-parallel
Strand 3	C	200	209	anti-parallel
Strand 4	C	187	189	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	159	169	anti-parallel
Strand 3	C	200	209	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	218	224	anti-parallel
Strand 3	C	229	235	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	81	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	131	135	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	34	44	anti-parallel
Strand 5	D	51	57	anti-parallel
Strand 6	D	63	67	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	131	135	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	126	127	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	101	108	anti-parallel
Strand 4	E	40	44	anti-parallel
Strand 5	E	51	55	anti-parallel
Strand 6	E	66	67	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	101	108	anti-parallel
Strand 4	E	113	116	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	177	181	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	19	26	anti-parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	76	81	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	131	135	parallel
Strand 3	F	100	108	anti-parallel
Strand 4	F	33	44	anti-parallel
Strand 5	F	50	57	anti-parallel
Strand 6	F	62	67	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	148	first strand
Strand 2	F	159	169	anti-parallel
Strand 3	F	200	209	anti-parallel
Strand 4	F	187	189	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	148	first strand
Strand 2	F	159	169	anti-parallel
Strand 3	F	200	209	anti-parallel
Strand 4	F	193	194	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	178	first strand
Strand 2	F	219	224	anti-parallel
Strand 3	F	229	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T58

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T58