Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T5C entry

There are 11 chains in PDB entry 8T5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 59	ARG 259
b	GLY 260	GLU 418
A	THR 59	SER 255
a	GLY 260	GLU 418
C	THR 59	ARG 259
c	GLY 260	GLU 418
D	ALA 1	SER 116
H	GLN 1	SER 113
L	ASP 0	ARG 108
E	GLN 1	SER 113
I	ASP 0	ARG 108

There are 37 helices in PDB entry 8T5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	120	127	Right-handed alpha
Helix 2	AA2	B	131	143	Right-handed alpha
Helix 3	AA3	B	185	195	Right-handed alpha
Helix 4	AA4	B	238	249	Right-handed alpha
Helix 5	AA5	b	294	303	Right-handed alpha
Helix 6	AA6	b	307	324	Right-handed alpha
Helix 7	AA7	b	334	340	Right-handed alpha
Helix 8	AA8	b	340	345	Right-handed alpha
Helix 9	AA9	b	346	360	Right-handed alpha
Helix 10	AB1	b	399	418	Right-handed alpha
Helix 11	AB2	A	119	126	Right-handed alpha
Helix 12	AB3	A	136	143	Right-handed alpha
Helix 13	AB4	A	184	195	Right-handed alpha
Helix 14	AB5	A	238	247	Right-handed alpha
Helix 15	AB6	a	281	285	Right-handed 310
Helix 16	AB7	a	294	305	Right-handed alpha
Helix 17	AB8	a	307	325	Right-handed alpha
Helix 18	AB9	a	335	339	Right-handed 310
Helix 19	AC1	a	340	345	Right-handed alpha
Helix 20	AC2	a	346	354	Right-handed alpha
Helix 21	AC3	a	399	418	Right-handed alpha
Helix 22	AC4	C	120	124	Right-handed 310
Helix 23	AC5	C	131	133	Right-handed 310
Helix 24	AC6	C	134	143	Right-handed alpha
Helix 25	AC7	C	171	175	Right-handed 310
Helix 26	AC8	C	186	195	Right-handed alpha
Helix 27	AC9	C	238	247	Right-handed alpha
Helix 28	AD1	c	281	285	Right-handed 310
Helix 29	AD2	c	299	303	Right-handed 310
Helix 30	AD3	c	307	323	Right-handed alpha
Helix 31	AD4	c	333	339	Right-handed alpha
Helix 32	AD5	c	340	345	Right-handed alpha
Helix 33	AD6	c	346	359	Right-handed alpha
Helix 34	AD7	c	399	418	Right-handed alpha
Helix 35	AD8	D	87	91	Right-handed 310
Helix 36	AD9	H	83	87	Right-handed 310
Helix 37	AE1	E	83	87	Right-handed 310

There are 23 sheets in PDB entry 8T5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	285	286	first strand
Strand 2	B	67	73	anti-parallel
Strand 3	b	369	373	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	93	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	219	221	anti-parallel
Strand 3	B	164	167	anti-parallel
Strand 4	B	154	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	279	280	first strand
Strand 2	b	291	292	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	373	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	95	96	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	164	167	anti-parallel
Strand 3	A	219	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	372	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	94	97	anti-parallel
Strand 3	C	101	102	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	219	222	anti-parallel
Strand 3	C	164	167	anti-parallel
Strand 4	C	153	155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	279	280	first strand
Strand 2	c	291	292	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	70	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	109	113	parallel
Strand 3	D	92	95	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	77	79	anti-parallel
Strand 4	H	70	72	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	52	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	52	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	107	109	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	22	25	anti-parallel
Strand 3	L	70	74	anti-parallel
Strand 4	L	63	65	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	102	103	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	21	25	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	51	52	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	65	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	33	38	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5C