Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T5M entry

There is 1 chain in PDB entry 8T5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 565ARG 1044
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8T5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
573 577Right-handed 310
Helix 2
AA2
A
603 612Right-handed alpha
Helix 3
AA3
A
618 629Right-handed alpha
Helix 4
AA4
A
630 632Right-handed 310
Helix 5
AA5
A
634 647Right-handed alpha
Helix 6
AA6
A
670 679Right-handed alpha
Helix 7
AA7
A
679 698Right-handed alpha
Helix 8
AA8
A
699 704Right-handed alpha
Helix 9
AA9
A
705 719Right-handed alpha
Helix 10
AB1
A
724 741Right-handed alpha
Helix 11
AB2
A
768 772Right-handed 310
Helix 12
AB3
A
778 796Right-handed alpha
Helix 13
AB4
A
797 809Right-handed 310
Helix 14
AB5
A
811 816Right-handed alpha
Helix 15
AB6
A
816 839Right-handed alpha
Helix 16
AB7
A
842 863Right-handed alpha
Helix 17
AB8
A
865 877Right-handed alpha
Helix 18
AB9
A
878 883Right-handed alpha
Helix 19
AC1
A
884 890Right-handed alpha
Helix 20
AC2
A
892 906Right-handed alpha
Helix 21
AC3
A
906 920Right-handed alpha
Helix 22
AC4
A
928 942Right-handed alpha
Helix 23
AC5
A
956 970Right-handed alpha
Helix 24
AC6
A
971 973Right-handed 310
Helix 25
AC7
A
982 991Right-handed alpha
Helix 26
AC8
A
999 1015Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8T5M.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 586first strand
Strand 2
A
599 602anti-parallel
Strand 3
A
953 955anti-parallel
Strand 4
A
945 947anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il