Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T5P entry

There are 9 chains in PDB entry 8T5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 377	ASP 566
B	THR 377	ASP 566
C	THR 377	ASP 566
D	THR 377	ASP 566
E	THR 377	ASP 566
F	THR 377	ASP 566
G	PRO 36	SER 40
H	PRO 36	SER 40
I	PRO 36	SER 40

There are 35 helices in PDB entry 8T5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	377	410	Right-handed alpha
Helix 2	AA2	A	423	433	Right-handed alpha
Helix 3	AA3	A	462	466	Right-handed 310
Helix 4	AA4	A	481	485	Right-handed 310
Helix 5	AA5	A	517	521	Right-handed 310
Helix 6	AA6	A	539	545	Right-handed alpha
Helix 7	AA7	B	378	410	Right-handed alpha
Helix 8	AA8	B	423	433	Right-handed alpha
Helix 9	AA9	B	462	466	Right-handed 310
Helix 10	AB1	B	481	485	Right-handed 310
Helix 11	AB2	B	517	521	Right-handed 310
Helix 12	AB3	B	539	545	Right-handed alpha
Helix 13	AB4	C	378	410	Right-handed alpha
Helix 14	AB5	C	423	433	Right-handed alpha
Helix 15	AB6	C	462	466	Right-handed 310
Helix 16	AB7	C	481	485	Right-handed 310
Helix 17	AB8	C	539	545	Right-handed alpha
Helix 18	AB9	D	378	410	Right-handed alpha
Helix 19	AC1	D	423	433	Right-handed alpha
Helix 20	AC2	D	462	466	Right-handed 310
Helix 21	AC3	D	481	485	Right-handed 310
Helix 22	AC4	D	517	521	Right-handed 310
Helix 23	AC5	D	539	544	Right-handed alpha
Helix 24	AC6	E	378	410	Right-handed alpha
Helix 25	AC7	E	423	433	Right-handed alpha
Helix 26	AC8	E	462	466	Right-handed 310
Helix 27	AC9	E	481	485	Right-handed 310
Helix 28	AD1	E	517	521	Right-handed 310
Helix 29	AD2	E	539	545	Right-handed alpha
Helix 30	AD3	F	378	411	Right-handed alpha
Helix 31	AD4	F	423	433	Right-handed alpha
Helix 32	AD5	F	462	466	Right-handed 310
Helix 33	AD6	F	481	485	Right-handed 310
Helix 34	AD7	F	517	521	Right-handed 310
Helix 35	AD8	F	539	545	Right-handed alpha

There are 18 sheets in PDB entry 8T5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	422	first strand
Strand 2	A	552	559	anti-parallel
Strand 3	A	493	497	anti-parallel
Strand 4	A	507	511	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	452	458	anti-parallel
Strand 3	A	444	445	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	452	458	anti-parallel
Strand 3	A	469	477	anti-parallel
Strand 4	A	531	538	anti-parallel
Strand 5	G	37	38	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	422	first strand
Strand 2	B	552	559	anti-parallel
Strand 3	B	493	497	anti-parallel
Strand 4	B	507	511	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	452	458	anti-parallel
Strand 3	B	444	445	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	452	458	anti-parallel
Strand 3	B	469	477	anti-parallel
Strand 4	B	531	538	anti-parallel
Strand 5	H	37	38	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	422	first strand
Strand 2	C	552	559	anti-parallel
Strand 3	C	493	497	anti-parallel
Strand 4	C	507	511	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	452	458	anti-parallel
Strand 3	C	444	445	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	452	458	anti-parallel
Strand 3	C	469	477	anti-parallel
Strand 4	C	531	538	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	422	first strand
Strand 2	D	552	559	anti-parallel
Strand 3	D	493	497	anti-parallel
Strand 4	D	507	511	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	440	first strand
Strand 2	D	452	458	anti-parallel
Strand 3	D	444	445	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	440	first strand
Strand 2	D	452	458	anti-parallel
Strand 3	D	469	477	anti-parallel
Strand 4	D	531	538	anti-parallel
Strand 5	I	37	38	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	422	first strand
Strand 2	E	552	559	anti-parallel
Strand 3	E	493	497	anti-parallel
Strand 4	E	507	511	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	440	first strand
Strand 2	E	452	458	anti-parallel
Strand 3	E	444	445	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	440	first strand
Strand 2	E	452	458	anti-parallel
Strand 3	E	469	477	anti-parallel
Strand 4	E	531	538	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	416	421	first strand
Strand 2	F	553	559	anti-parallel
Strand 3	F	493	497	anti-parallel
Strand 4	F	507	511	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	439	440	first strand
Strand 2	F	452	458	anti-parallel
Strand 3	F	444	445	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	439	440	first strand
Strand 2	F	452	458	anti-parallel
Strand 3	F	469	477	anti-parallel
Strand 4	F	531	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5P