Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T5Q entry

There are 9 chains in PDB entry 8T5Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 334	LEU 501
B	ALA 334	LEU 501
C	ALA 334	LEU 501
D	ALA 334	LEU 501
E	ALA 334	LEU 501
F	ALA 334	LEU 501
G	PRO 204	SER 208
H	PRO 204	SER 208
I	PRO 204	SER 208

There are 36 helices in PDB entry 8T5Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	334	348	Right-handed alpha
Helix 2	AA2	A	360	370	Right-handed alpha
Helix 3	AA3	A	399	403	Right-handed 310
Helix 4	AA4	A	418	422	Right-handed 310
Helix 5	AA5	A	453	457	Right-handed 310
Helix 6	AA6	A	475	480	Right-handed alpha
Helix 7	AA7	B	335	348	Right-handed alpha
Helix 8	AA8	B	360	370	Right-handed alpha
Helix 9	AA9	B	399	403	Right-handed 310
Helix 10	AB1	B	418	422	Right-handed 310
Helix 11	AB2	B	453	457	Right-handed 310
Helix 12	AB3	B	476	479	Right-handed 310
Helix 13	AB4	C	335	348	Right-handed alpha
Helix 14	AB5	C	360	370	Right-handed alpha
Helix 15	AB6	C	399	403	Right-handed 310
Helix 16	AB7	C	418	422	Right-handed 310
Helix 17	AB8	C	453	457	Right-handed 310
Helix 18	AB9	C	476	478	Right-handed 310
Helix 19	AC1	D	335	348	Right-handed alpha
Helix 20	AC2	D	360	370	Right-handed alpha
Helix 21	AC3	D	399	403	Right-handed 310
Helix 22	AC4	D	418	422	Right-handed 310
Helix 23	AC5	D	453	457	Right-handed 310
Helix 24	AC6	D	476	479	Right-handed 310
Helix 25	AC7	E	335	348	Right-handed alpha
Helix 26	AC8	E	360	370	Right-handed alpha
Helix 27	AC9	E	399	403	Right-handed 310
Helix 28	AD1	E	418	422	Right-handed 310
Helix 29	AD2	E	453	457	Right-handed 310
Helix 30	AD3	E	476	479	Right-handed 310
Helix 31	AD4	F	335	348	Right-handed alpha
Helix 32	AD5	F	360	370	Right-handed alpha
Helix 33	AD6	F	399	403	Right-handed 310
Helix 34	AD7	F	418	422	Right-handed 310
Helix 35	AD8	F	453	457	Right-handed 310
Helix 36	AD9	F	476	479	Right-handed 310

There are 18 sheets in PDB entry 8T5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	359	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	430	434	anti-parallel
Strand 4	A	443	447	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	381	382	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	406	414	anti-parallel
Strand 4	A	467	474	anti-parallel
Strand 5	G	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	490	496	anti-parallel
Strand 3	B	430	434	anti-parallel
Strand 4	B	443	447	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	406	414	anti-parallel
Strand 4	B	467	474	anti-parallel
Strand 5	H	205	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	359	first strand
Strand 2	C	489	496	anti-parallel
Strand 3	C	430	434	anti-parallel
Strand 4	C	443	447	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	381	382	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	406	414	anti-parallel
Strand 4	C	467	474	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	359	first strand
Strand 2	D	489	496	anti-parallel
Strand 3	D	430	434	anti-parallel
Strand 4	D	443	447	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	377	first strand
Strand 2	D	389	395	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	377	first strand
Strand 2	D	389	395	anti-parallel
Strand 3	D	406	414	anti-parallel
Strand 4	D	467	474	anti-parallel
Strand 5	I	205	206	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	358	first strand
Strand 2	E	490	496	anti-parallel
Strand 3	E	430	434	anti-parallel
Strand 4	E	443	447	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	377	first strand
Strand 2	E	389	395	anti-parallel
Strand 3	E	381	382	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	377	first strand
Strand 2	E	389	395	anti-parallel
Strand 3	E	406	414	anti-parallel
Strand 4	E	467	474	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	358	first strand
Strand 2	F	490	496	anti-parallel
Strand 3	F	430	434	anti-parallel
Strand 4	F	443	447	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	377	first strand
Strand 2	F	389	395	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	377	first strand
Strand 2	F	389	395	anti-parallel
Strand 3	F	406	414	anti-parallel
Strand 4	F	467	474	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T5Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5Q