Analysis of interatomic Contacts of Structural Units in PDB entry:
8T5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T5S entry

There are 3 chains in PDB entry 8T5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 290GLN 1015
C
 U 11 U 40
B
 A 17 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8T5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 305Right-handed alpha
Helix 2
AA2
A
319 339Right-handed alpha
Helix 3
AA3
A
353 365Right-handed alpha
Helix 4
AA4
A
381 389Right-handed alpha
Helix 5
AA5
A
395 402Right-handed alpha
Helix 6
AA6
A
420 424Right-handed 310
Helix 7
AA7
A
432 435Right-handed 310
Helix 8
AA8
A
439 454Right-handed alpha
Helix 9
AA9
A
480 495Right-handed alpha
Helix 10
AB1
A
506 514Right-handed alpha
Helix 11
AB2
A
529 557Right-handed alpha
Helix 12
AB3
A
589 605Right-handed alpha
Helix 13
AB4
A
610 637Right-handed alpha
Helix 14
AB5
A
638 654Right-handed alpha
Helix 15
AB6
A
655 657Right-handed 310
Helix 16
AB7
A
658 676Right-handed alpha
Helix 17
AB8
A
680 697Right-handed alpha
Helix 18
AB9
A
708 721Right-handed alpha
Helix 19
AC1
A
722 728Right-handed alpha
Helix 20
AC2
A
751 764Right-handed alpha
Helix 21
AC3
A
773 778Right-handed 310
Helix 22
AC4
A
796 806Right-handed alpha
Helix 23
AC5
A
820 847Right-handed alpha
Helix 24
AC6
A
853 859Right-handed alpha
Helix 25
AC7
A
861 881Right-handed alpha
Helix 26
AC8
A
915 919Right-handed 310
Helix 27
AC9
A
988 996Right-handed alpha
Helix 28
AD1
A
1005 1014Right-handed alpha
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There are 5 sheets in PDB entry 8T5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
391 394parallel
Strand 3
A
344 347parallel
Strand 4
A
426 430parallel
Strand 5
A
465 470parallel
Strand 6
A
310 313parallel
Strand 7
A
499 501parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 523first strand
Strand 2
A
813 818parallel
Strand 3
A
787 791parallel
Strand 4
A
702 705parallel
Strand 5
A
769 772parallel
Strand 6
A
732 733parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 891first strand
Strand 2
A
973 976anti-parallel
Strand 3
A
983 985anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 913first strand
Strand 2
A
904 906anti-parallel
Strand 3
A
1000 1001parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
953 959anti-parallel
Strand 3
A
964 968anti-parallel
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