Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T6J entry

There are 2 chains in PDB entry 8T6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 26	ALA 827
A	ARG 26	ALA 827

There are 58 helices in PDB entry 8T6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	48	52	Right-handed 310
Helix 2	AA2	B	66	82	Right-handed alpha
Helix 3	AA3	B	101	117	Right-handed alpha
Helix 4	AA4	B	153	163	Right-handed alpha
Helix 5	AA5	B	164	166	Right-handed 310
Helix 6	AA6	B	177	181	Right-handed 310
Helix 7	AA7	B	197	209	Right-handed alpha
Helix 8	AA8	B	221	237	Right-handed alpha
Helix 9	AA9	B	253	265	Right-handed alpha
Helix 10	AB1	B	266	268	Right-handed 310
Helix 11	AB2	B	281	294	Right-handed alpha
Helix 12	AB3	B	334	342	Right-handed alpha
Helix 13	AB4	B	345	349	Right-handed 310
Helix 14	AB5	B	354	364	Right-handed alpha
Helix 15	AB6	B	396	419	Right-handed alpha
Helix 16	AB7	B	433	443	Right-handed alpha
Helix 17	AB8	B	495	500	Right-handed alpha
Helix 18	AB9	B	502	506	Right-handed 310
Helix 19	AC1	B	577	604	Right-handed alpha
Helix 20	AC2	B	607	613	Right-handed alpha
Helix 21	AC3	B	614	630	Right-handed alpha
Helix 22	AC4	B	631	637	Right-handed alpha
Helix 23	AC5	B	640	673	Right-handed alpha
Helix 24	AC6	B	689	715	Right-handed alpha
Helix 25	AC7	B	737	761	Right-handed alpha
Helix 26	AC8	B	765	793	Right-handed alpha
Helix 27	AC9	B	797	816	Right-handed alpha
Helix 28	AD1	B	818	827	Right-handed alpha
Helix 29	AD2	A	48	52	Right-handed 310
Helix 30	AD3	A	66	82	Right-handed alpha
Helix 31	AD4	A	101	117	Right-handed alpha
Helix 32	AD5	A	153	163	Right-handed alpha
Helix 33	AD6	A	164	166	Right-handed 310
Helix 34	AD7	A	177	181	Right-handed 310
Helix 35	AD8	A	197	209	Right-handed alpha
Helix 36	AD9	A	221	236	Right-handed alpha
Helix 37	AE1	A	237	239	Right-handed 310
Helix 38	AE2	A	253	266	Right-handed alpha
Helix 39	AE3	A	281	294	Right-handed alpha
Helix 40	AE4	A	310	314	Right-handed 310
Helix 41	AE5	A	334	342	Right-handed alpha
Helix 42	AE6	A	345	349	Right-handed 310
Helix 43	AE7	A	354	364	Right-handed alpha
Helix 44	AE8	A	396	419	Right-handed alpha
Helix 45	AE9	A	426	430	Right-handed 310
Helix 46	AF1	A	433	443	Right-handed alpha
Helix 47	AF2	A	495	500	Right-handed alpha
Helix 48	AF3	A	502	506	Right-handed 310
Helix 49	AF4	A	577	604	Right-handed alpha
Helix 50	AF5	A	607	613	Right-handed alpha
Helix 51	AF6	A	614	630	Right-handed alpha
Helix 52	AF7	A	631	637	Right-handed alpha
Helix 53	AF8	A	640	673	Right-handed alpha
Helix 54	AF9	A	689	715	Right-handed alpha
Helix 55	AG1	A	737	761	Right-handed alpha
Helix 56	AG2	A	765	788	Right-handed alpha
Helix 57	AG3	A	797	816	Right-handed alpha
Helix 58	AG4	A	818	827	Right-handed alpha

There are 18 sheets in PDB entry 8T6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	36	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	241	245	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	300	303	parallel
Strand 3	B	325	329	parallel
Strand 4	B	466	468	anti-parallel
Strand 5	B	485	487	anti-parallel
Strand 6	B	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	475	first strand
Strand 2	B	478	481	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	533	535	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	549	551	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	558	first strand
Strand 2	B	565	567	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	93	97	anti-parallel
Strand 3	A	36	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	171	parallel
Strand 6	A	188	190	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	241	245	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	301	303	parallel
Strand 3	A	325	329	parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	478	481	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	301	303	parallel
Strand 3	A	325	329	parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	485	487	anti-parallel
Strand 6	A	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	533	535	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	543	first strand
Strand 2	A	549	551	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	558	first strand
Strand 2	A	565	567	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	730	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6J