Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T6M entry

There are 7 chains in PDB entry 8T6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 26LYS 131
B
 GLN 17SER 142
C
 ASP 25THR 131
D
 GLN 17SER 137
E
 GLY 1ARG 181
F
 MET 1TRP 96
G
 VAL 1TYR 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8T6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 107Right-handed 310
Helix 2
AA2
A
116 119Right-handed 310
Helix 3
AA3
B
104 108Right-handed 310
Helix 4
AA4
C
103 107Right-handed 310
Helix 5
AA5
D
79 81Right-handed 310
Helix 6
AA6
D
89 91Right-handed 310
Helix 7
AA7
D
102 106Right-handed 310
Helix 8
AA8
E
49 54Right-handed alpha
Helix 9
AA9
E
56 86Right-handed alpha
Helix 10
AB1
E
137 150Right-handed alpha
Helix 11
AB2
E
151 162Right-handed alpha
Helix 12
AB3
E
162 175Right-handed alpha
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There are 16 sheets in PDB entry 8T6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
86 91anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
126 130parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
57 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
126 130parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
121 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
95 100anti-parallel
Strand 4
B
86 90anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
109 116anti-parallel
Strand 5
B
137 139anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
124 126anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
43 49anti-parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
86 89anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
57 62anti-parallel
Strand 4
C
109 114anti-parallel
Strand 5
C
121 122anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
57 62anti-parallel
Strand 4
C
109 114anti-parallel
Strand 5
C
126 127anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 23first strand
Strand 2
D
34 41anti-parallel
Strand 3
D
93 98anti-parallel
Strand 4
D
83 88anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 75first strand
Strand 2
D
62 68anti-parallel
Strand 3
D
49 55anti-parallel
Strand 4
D
107 117anti-parallel
Strand 5
D
121 128anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 75first strand
Strand 2
D
62 68anti-parallel
Strand 3
D
49 55anti-parallel
Strand 4
D
107 117anti-parallel
Strand 5
D
132 134anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 47first strand
Strand 2
E
31 37anti-parallel
Strand 3
E
21 28anti-parallel
Strand 4
E
3 12anti-parallel
Strand 5
E
94 103anti-parallel
Strand 6
E
109 118anti-parallel
Strand 7
E
121 126anti-parallel
Strand 8
E
133 135anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
24 31anti-parallel
Strand 3
F
63 66anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
79 84anti-parallel
Strand 3
F
41 42anti-parallel
Strand 4
F
45 46anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 38first strand
Strand 2
F
79 84anti-parallel
Strand 3
F
92 95anti-parallel
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