Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T6Q entry

There are 12 chains in PDB entry 8T6Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 408	GLN 542
B	LYS 408	GLN 542
C	LYS 408	GLN 542
D	LYS 408	GLN 542
F	LYS 408	GLN 542
G	LYS 408	GLN 542
H	LYS 408	GLN 542
I	LYS 408	GLN 542
J	LYS 408	GLN 542
K	LYS 408	GLN 542
L	LYS 408	GLN 542
N	LYS 408	GLN 542

There are 55 helices in PDB entry 8T6Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	408	425	Right-handed alpha
Helix 2	AA2	A	426	428	Right-handed 310
Helix 3	AA3	A	429	437	Right-handed alpha
Helix 4	AA4	A	455	470	Right-handed alpha
Helix 5	AA5	B	409	428	Right-handed alpha
Helix 6	AA6	B	429	437	Right-handed alpha
Helix 7	AA7	B	445	449	Right-handed 310
Helix 8	AA8	B	456	466	Right-handed alpha
Helix 9	AA9	B	467	470	Right-handed 310
Helix 10	AB1	C	410	426	Right-handed alpha
Helix 11	AB2	C	430	437	Right-handed alpha
Helix 12	AB3	C	445	449	Right-handed 310
Helix 13	AB4	C	456	466	Right-handed alpha
Helix 14	AB5	D	409	427	Right-handed alpha
Helix 15	AB6	D	430	436	Right-handed alpha
Helix 16	AB7	D	445	449	Right-handed 310
Helix 17	AB8	D	456	466	Right-handed alpha
Helix 18	AB9	F	409	428	Right-handed alpha
Helix 19	AC1	F	429	436	Right-handed alpha
Helix 20	AC2	F	456	461	Right-handed alpha
Helix 21	AC3	F	463	468	Right-handed alpha
Helix 22	AC4	G	409	428	Right-handed alpha
Helix 23	AC5	G	429	437	Right-handed alpha
Helix 24	AC6	G	445	449	Right-handed 310
Helix 25	AC7	G	456	466	Right-handed alpha
Helix 26	AC8	G	467	470	Right-handed 310
Helix 27	AC9	H	409	428	Right-handed alpha
Helix 28	AD1	H	429	437	Right-handed alpha
Helix 29	AD2	H	445	449	Right-handed 310
Helix 30	AD3	H	456	470	Right-handed alpha
Helix 31	AD4	H	522	525	Right-handed 310
Helix 32	AD5	I	409	428	Right-handed alpha
Helix 33	AD6	I	429	437	Right-handed alpha
Helix 34	AD7	I	445	449	Right-handed 310
Helix 35	AD8	I	456	466	Right-handed alpha
Helix 36	AD9	J	409	428	Right-handed alpha
Helix 37	AE1	J	429	437	Right-handed alpha
Helix 38	AE2	J	445	449	Right-handed 310
Helix 39	AE3	J	456	461	Right-handed alpha
Helix 40	AE4	J	466	470	Right-handed 310
Helix 41	AE5	K	409	428	Right-handed alpha
Helix 42	AE6	K	429	437	Right-handed alpha
Helix 43	AE7	K	445	449	Right-handed 310
Helix 44	AE8	K	456	461	Right-handed alpha
Helix 45	AE9	K	461	466	Right-handed alpha
Helix 46	AF1	L	409	428	Right-handed alpha
Helix 47	AF2	L	429	436	Right-handed alpha
Helix 48	AF3	L	445	449	Right-handed 310
Helix 49	AF4	L	456	468	Right-handed alpha
Helix 50	AF5	L	469	472	Right-handed 310
Helix 51	AF6	N	409	427	Right-handed alpha
Helix 52	AF7	N	429	437	Right-handed alpha
Helix 53	AF8	N	445	449	Right-handed 310
Helix 54	AF9	N	456	461	Right-handed alpha
Helix 55	AG1	N	466	470	Right-handed 310

There are 19 sheets in PDB entry 8T6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	483	first strand
Strand 2	A	490	502	anti-parallel
Strand 3	A	508	520	anti-parallel
Strand 4	A	527	532	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	442	444	anti-parallel
Strand 3	B	527	535	parallel
Strand 4	B	508	520	anti-parallel
Strand 5	B	490	502	anti-parallel
Strand 6	B	475	487	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	443	first strand
Strand 2	C	453	454	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	486	first strand
Strand 2	C	490	502	anti-parallel
Strand 3	C	508	520	anti-parallel
Strand 4	C	527	534	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	454	first strand
Strand 2	D	437	444	anti-parallel
Strand 3	D	527	533	parallel
Strand 4	D	508	520	anti-parallel
Strand 5	D	490	502	anti-parallel
Strand 6	D	474	486	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	454	first strand
Strand 2	F	437	444	anti-parallel
Strand 3	F	527	532	parallel
Strand 4	F	511	520	anti-parallel
Strand 5	F	490	500	anti-parallel
Strand 6	F	475	486	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	442	443	first strand
Strand 2	G	453	454	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	474	486	first strand
Strand 2	G	490	502	anti-parallel
Strand 3	G	508	520	anti-parallel
Strand 4	G	527	533	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	474	483	first strand
Strand 2	H	490	502	anti-parallel
Strand 3	H	508	513	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	474	483	first strand
Strand 2	H	490	502	anti-parallel
Strand 3	H	516	520	anti-parallel
Strand 4	H	527	532	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	442	443	first strand
Strand 2	I	453	454	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	474	486	first strand
Strand 2	I	490	502	anti-parallel
Strand 3	I	508	520	anti-parallel
Strand 4	I	527	535	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	453	454	first strand
Strand 2	J	442	444	anti-parallel
Strand 3	J	527	532	parallel
Strand 4	J	508	520	anti-parallel
Strand 5	J	490	502	anti-parallel
Strand 6	J	474	486	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	442	443	first strand
Strand 2	K	453	454	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	474	485	first strand
Strand 2	K	490	502	anti-parallel
Strand 3	K	508	520	anti-parallel
Strand 4	K	527	533	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	437	442	first strand
Strand 2	L	528	530	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	474	486	first strand
Strand 2	L	490	502	anti-parallel
Strand 3	L	508	520	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	442	443	first strand
Strand 2	N	453	454	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	474	486	first strand
Strand 2	N	490	502	anti-parallel
Strand 3	N	508	520	anti-parallel
Strand 4	N	527	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T6Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6Q