Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T6R entry

There is 1 chain in PDB entry 8T6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7LYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8T6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
100 106Right-handed alpha
Helix 5
AA5
A
111 135Right-handed alpha
Helix 6
AA6
A
139 144Right-handed alpha
Helix 7
AA7
A
145 147Right-handed 310
Helix 8
AA8
A
158 169Right-handed alpha
Helix 9
AA9
A
179 193Right-handed alpha
Helix 10
AB1
A
285 287Right-handed 310
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There are 4 sheets in PDB entry 8T6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
242 246parallel
Strand 3
A
270 283anti-parallel
Strand 4
A
90 99anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
242 246parallel
Strand 3
A
270 283anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
253 255anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
86 88anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
289 296parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
175 178anti-parallel
Strand 5
A
213 217parallel
Strand 6
A
205 210anti-parallel
Strand 7
A
199 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il