Analysis of interatomic Contacts of Structural Units in PDB entry:
8T6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T6S entry

There are 4 chains in PDB entry 8T6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 A 9 U 98
C
 T 10 C 29
D
 A 38 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8T6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
175 179Right-handed 310
Helix 7
AA7
A
181 183Right-handed 310
Helix 8
AA8
A
184 190Right-handed alpha
Helix 9
AA9
A
207 211Right-handed 310
Helix 10
AB1
A
217 228Right-handed alpha
Helix 11
AB2
A
241 246Right-handed alpha
Helix 12
AB3
A
289 306Right-handed alpha
Helix 13
AB4
A
315 343Right-handed alpha
Helix 14
AB5
A
344 353Right-handed alpha
Helix 15
AB6
A
358 364Right-handed alpha
Helix 16
AB7
A
368 383Right-handed alpha
Helix 17
AB8
A
386 395Right-handed alpha
Helix 18
AB9
A
404 410Right-handed 310
Helix 19
AC1
A
411 427Right-handed alpha
Helix 20
AC2
A
430 436Right-handed alpha
Helix 21
AC3
A
436 446Right-handed alpha
Helix 22
AC4
A
477 482Right-handed alpha
Helix 23
AC5
A
483 494Right-handed alpha
Helix 24
AC6
A
512 526Right-handed alpha
Helix 25
AC7
A
593 602Right-handed alpha
Helix 26
AC8
A
612 626Right-handed alpha
Helix 27
AC9
A
628 637Right-handed alpha
Helix 28
AD1
A
638 643Right-handed 310
Helix 29
AD2
A
644 652Right-handed alpha
Helix 30
AD3
A
678 684Right-handed alpha
Helix 31
AD4
A
721 726Right-handed alpha
Helix 32
AD5
A
730 751Right-handed alpha
Helix 33
AD6
A
922 933Right-handed alpha
Helix 34
AD7
A
933 938Right-handed alpha
Helix 35
AD8
A
959 970Right-handed alpha
Helix 36
AD9
A
980 1000Right-handed alpha
Helix 37
AE1
A
1079 1087Right-handed alpha
Helix 38
AE2
A
1127 1132Right-handed alpha
Helix 39
AE3
A
1168 1177Right-handed alpha
Helix 40
AE4
A
1177 1186Right-handed alpha
Helix 41
AE5
A
1191 1195Right-handed 310
Helix 42
AE6
A
1207 1209Right-handed 310
Helix 43
AE7
A
1229 1240Right-handed alpha
Helix 44
AE8
A
1250 1260Right-handed alpha
Helix 45
AE9
A
1261 1263Right-handed 310
Helix 46
AF1
A
1264 1280Right-handed alpha
Helix 47
AF2
A
1284 1297Right-handed alpha
Helix 48
AF3
A
1301 1313Right-handed alpha
Helix 49
AF4
A
1339 1343Right-handed 310
Helix 50
AF5
A
1363 1365Right-handed 310
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There are 5 sheets in PDB entry 8T6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
48 52anti-parallel
Strand 4
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
43 46anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
659 660anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1199anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1222first strand
Strand 2
A
1211 1216anti-parallel
Strand 3
A
1203 1205anti-parallel
Strand 4
A
1346 1349anti-parallel
Strand 5
A
1358 1361anti-parallel
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