Analysis of interatomic Contacts of Structural Units in PDB entry:
8T77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T77 entry

There are 4 chains in PDB entry 8T77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 U 10 U 98
C
 T 10 T 25
D
 A 38 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8T77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
181 196Right-handed alpha
Helix 7
AA7
A
207 212Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
315 343Right-handed alpha
Helix 10
AB1
A
343 353Right-handed alpha
Helix 11
AB2
A
358 364Right-handed alpha
Helix 12
AB3
A
368 383Right-handed alpha
Helix 13
AB4
A
386 395Right-handed alpha
Helix 14
AB5
A
404 410Right-handed 310
Helix 15
AB6
A
411 426Right-handed alpha
Helix 16
AB7
A
430 436Right-handed alpha
Helix 17
AB8
A
436 446Right-handed alpha
Helix 18
AB9
A
474 476Right-handed 310
Helix 19
AC1
A
477 482Right-handed alpha
Helix 20
AC2
A
483 496Right-handed alpha
Helix 21
AC3
A
512 526Right-handed alpha
Helix 22
AC4
A
541 552Right-handed alpha
Helix 23
AC5
A
560 568Right-handed alpha
Helix 24
AC6
A
591 601Right-handed alpha
Helix 25
AC7
A
603 609Right-handed alpha
Helix 26
AC8
A
612 626Right-handed alpha
Helix 27
AC9
A
628 637Right-handed alpha
Helix 28
AD1
A
638 642Right-handed 310
Helix 29
AD2
A
645 650Right-handed alpha
Helix 30
AD3
A
651 653Right-handed 310
Helix 31
AD4
A
663 668Right-handed alpha
Helix 32
AD5
A
678 685Right-handed alpha
Helix 33
AD6
A
692 699Right-handed alpha
Helix 34
AD7
A
703 710Right-handed alpha
Helix 35
AD8
A
719 726Right-handed alpha
Helix 36
AD9
A
730 751Right-handed alpha
Helix 37
AE1
A
922 933Right-handed alpha
Helix 38
AE2
A
933 938Right-handed alpha
Helix 39
AE3
A
959 970Right-handed alpha
Helix 40
AE4
A
981 999Right-handed alpha
Helix 41
AE5
A
1079 1088Right-handed alpha
Helix 42
AE6
A
1127 1132Right-handed alpha
Helix 43
AE7
A
1170 1177Right-handed alpha
Helix 44
AE8
A
1177 1185Right-handed alpha
Helix 45
AE9
A
1191 1195Right-handed 310
Helix 46
AF1
A
1207 1209Right-handed 310
Helix 47
AF2
A
1229 1240Right-handed alpha
Helix 48
AF3
A
1241 1246Right-handed alpha
Helix 49
AF4
A
1251 1261Right-handed alpha
Helix 50
AF5
A
1263 1280Right-handed alpha
Helix 51
AF6
A
1284 1297Right-handed alpha
Helix 52
AF7
A
1301 1312Right-handed alpha
Helix 53
AF8
A
1313 1315Right-handed 310
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There are 5 sheets in PDB entry 8T77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 761parallel
Strand 3
A
7 10parallel
Strand 4
A
15 19anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1214anti-parallel
Strand 7
A
1220 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il