Analysis of interatomic Contacts of Structural Units in PDB entry:
8T78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T78 entry

There are 4 chains in PDB entry 8T78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 U 10 U 98
C
 T 10 A 27
D
 A 38 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8T78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
289 306Right-handed alpha
Helix 7
AA7
A
315 343Right-handed alpha
Helix 8
AA8
A
346 353Right-handed alpha
Helix 9
AA9
A
358 364Right-handed alpha
Helix 10
AB1
A
368 383Right-handed alpha
Helix 11
AB2
A
386 395Right-handed alpha
Helix 12
AB3
A
404 410Right-handed 310
Helix 13
AB4
A
411 427Right-handed alpha
Helix 14
AB5
A
430 436Right-handed alpha
Helix 15
AB6
A
436 446Right-handed alpha
Helix 16
AB7
A
477 482Right-handed alpha
Helix 17
AB8
A
483 494Right-handed alpha
Helix 18
AB9
A
593 602Right-handed alpha
Helix 19
AC1
A
612 626Right-handed alpha
Helix 20
AC2
A
628 637Right-handed alpha
Helix 21
AC3
A
638 643Right-handed 310
Helix 22
AC4
A
644 652Right-handed alpha
Helix 23
AC5
A
719 726Right-handed alpha
Helix 24
AC6
A
734 750Right-handed alpha
Helix 25
AC7
A
922 933Right-handed alpha
Helix 26
AC8
A
933 938Right-handed alpha
Helix 27
AC9
A
959 970Right-handed alpha
Helix 28
AD1
A
980 1000Right-handed alpha
Helix 29
AD2
A
1079 1088Right-handed alpha
Helix 30
AD3
A
1127 1132Right-handed alpha
Helix 31
AD4
A
1168 1177Right-handed alpha
Helix 32
AD5
A
1177 1185Right-handed alpha
Helix 33
AD6
A
1191 1195Right-handed 310
Helix 34
AD7
A
1207 1209Right-handed 310
Helix 35
AD8
A
1229 1239Right-handed alpha
Helix 36
AD9
A
1241 1246Right-handed alpha
Helix 37
AE1
A
1252 1258Right-handed alpha
Helix 38
AE2
A
1259 1262Right-handed 310
Helix 39
AE3
A
1263 1280Right-handed alpha
Helix 40
AE4
A
1284 1298Right-handed alpha
Helix 41
AE5
A
1301 1312Right-handed alpha
Helix 42
AE6
A
1313 1316Right-handed 310
Helix 43
AE7
A
1339 1343Right-handed 310
Helix 44
AE8
A
1363 1365Right-handed 310
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There are 4 sheets in PDB entry 8T78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 761parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1111first strand
Strand 2
A
1133 1137anti-parallel
Strand 3
A
1120 1121anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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