Analysis of interatomic Contacts of Structural Units in PDB entry:
8T79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T79 entry

There are 4 chains in PDB entry 8T79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 U 10 U 98
C
 T 10 T 29
D
 G 38 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8T79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
96 104Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
184 196Right-handed alpha
Helix 7
AA7
A
208 213Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
241 246Right-handed alpha
Helix 10
AB1
A
268 272Right-handed 310
Helix 11
AB2
A
289 306Right-handed alpha
Helix 12
AB3
A
315 343Right-handed alpha
Helix 13
AB4
A
345 352Right-handed alpha
Helix 14
AB5
A
358 364Right-handed alpha
Helix 15
AB6
A
368 383Right-handed alpha
Helix 16
AB7
A
386 395Right-handed alpha
Helix 17
AB8
A
404 410Right-handed 310
Helix 18
AB9
A
411 427Right-handed alpha
Helix 19
AC1
A
430 436Right-handed alpha
Helix 20
AC2
A
436 446Right-handed alpha
Helix 21
AC3
A
483 494Right-handed alpha
Helix 22
AC4
A
512 526Right-handed alpha
Helix 23
AC5
A
541 552Right-handed alpha
Helix 24
AC6
A
560 569Right-handed alpha
Helix 25
AC7
A
591 601Right-handed alpha
Helix 26
AC8
A
604 609Right-handed alpha
Helix 27
AC9
A
612 626Right-handed alpha
Helix 28
AD1
A
628 637Right-handed alpha
Helix 29
AD2
A
638 643Right-handed 310
Helix 30
AD3
A
644 654Right-handed alpha
Helix 31
AD4
A
664 668Right-handed alpha
Helix 32
AD5
A
678 685Right-handed alpha
Helix 33
AD6
A
692 698Right-handed alpha
Helix 34
AD7
A
704 712Right-handed alpha
Helix 35
AD8
A
719 726Right-handed alpha
Helix 36
AD9
A
730 751Right-handed alpha
Helix 37
AE1
A
919 926Right-handed alpha
Helix 38
AE2
A
927 929Right-handed 310
Helix 39
AE3
A
930 940Right-handed alpha
Helix 40
AE4
A
959 970Right-handed alpha
Helix 41
AE5
A
980 1001Right-handed alpha
Helix 42
AE6
A
1004 1009Right-handed alpha
Helix 43
AE7
A
1042 1047Right-handed 310
Helix 44
AE8
A
1077 1088Right-handed alpha
Helix 45
AE9
A
1170 1177Right-handed alpha
Helix 46
AF1
A
1177 1185Right-handed alpha
Helix 47
AF2
A
1207 1209Right-handed 310
Helix 48
AF3
A
1229 1241Right-handed alpha
Helix 49
AF4
A
1248 1262Right-handed alpha
Helix 50
AF5
A
1263 1280Right-handed alpha
Helix 51
AF6
A
1283 1296Right-handed alpha
Helix 52
AF7
A
1301 1313Right-handed alpha
Helix 53
AF8
A
1314 1316Right-handed 310
Helix 54
AF9
A
1340 1344Right-handed 310
Helix 55
AG1
A
1363 1365Right-handed 310
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There are 7 sheets in PDB entry 8T79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 958first strand
Strand 2
A
758 762parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
538 539anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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