Analysis of interatomic Contacts of Structural Units in PDB entry:
8T7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T7D entry

There are 4 chains in PDB entry 8T7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 414
B	LYS 3	LEU 414
C	LYS 4	LEU 414
D	SER 2	LYS 413

There are 60 helices in PDB entry 8T7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	54	68	Right-handed alpha
Helix 4	AA4	A	79	87	Right-handed alpha
Helix 5	AA5	A	94	104	Right-handed alpha
Helix 6	AA6	A	186	204	Right-handed alpha
Helix 7	AA7	A	218	234	Right-handed alpha
Helix 8	AA8	A	235	242	Right-handed alpha
Helix 9	AA9	A	250	260	Right-handed alpha
Helix 10	AB1	A	312	322	Right-handed alpha
Helix 11	AB2	A	329	348	Right-handed alpha
Helix 12	AB3	A	349	369	Right-handed alpha
Helix 13	AB4	A	373	382	Right-handed alpha
Helix 14	AB5	A	387	391	Right-handed 310
Helix 15	AB6	A	393	413	Right-handed alpha
Helix 16	AB7	B	16	30	Right-handed alpha
Helix 17	AB8	B	45	52	Right-handed alpha
Helix 18	AB9	B	54	68	Right-handed alpha
Helix 19	AC1	B	79	87	Right-handed alpha
Helix 20	AC2	B	94	104	Right-handed alpha
Helix 21	AC3	B	186	204	Right-handed alpha
Helix 22	AC4	B	218	234	Right-handed alpha
Helix 23	AC5	B	235	242	Right-handed alpha
Helix 24	AC6	B	251	260	Right-handed alpha
Helix 25	AC7	B	312	322	Right-handed alpha
Helix 26	AC8	B	329	348	Right-handed alpha
Helix 27	AC9	B	349	369	Right-handed alpha
Helix 28	AD1	B	373	382	Right-handed alpha
Helix 29	AD2	B	383	386	Right-handed 310
Helix 30	AD3	B	387	391	Right-handed 310
Helix 31	AD4	B	393	413	Right-handed alpha
Helix 32	AD5	C	16	30	Right-handed alpha
Helix 33	AD6	C	45	52	Right-handed alpha
Helix 34	AD7	C	54	68	Right-handed alpha
Helix 35	AD8	C	79	87	Right-handed alpha
Helix 36	AD9	C	94	104	Right-handed alpha
Helix 37	AE1	C	186	204	Right-handed alpha
Helix 38	AE2	C	218	234	Right-handed alpha
Helix 39	AE3	C	235	242	Right-handed alpha
Helix 40	AE4	C	251	261	Right-handed alpha
Helix 41	AE5	C	312	322	Right-handed alpha
Helix 42	AE6	C	329	348	Right-handed alpha
Helix 43	AE7	C	349	369	Right-handed alpha
Helix 44	AE8	C	373	381	Right-handed alpha
Helix 45	AE9	C	393	413	Right-handed alpha
Helix 46	AF1	D	16	30	Right-handed alpha
Helix 47	AF2	D	45	52	Right-handed alpha
Helix 48	AF3	D	54	68	Right-handed alpha
Helix 49	AF4	D	79	87	Right-handed alpha
Helix 50	AF5	D	94	104	Right-handed alpha
Helix 51	AF6	D	186	204	Right-handed alpha
Helix 52	AF7	D	218	235	Right-handed alpha
Helix 53	AF8	D	235	242	Right-handed alpha
Helix 54	AF9	D	251	260	Right-handed alpha
Helix 55	AG1	D	312	322	Right-handed alpha
Helix 56	AG2	D	329	347	Right-handed alpha
Helix 57	AG3	D	349	369	Right-handed alpha
Helix 58	AG4	D	373	379	Right-handed alpha
Helix 59	AG5	D	387	391	Right-handed 310
Helix 60	AG6	D	393	413	Right-handed alpha

There are 10 sheets in PDB entry 8T7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	43	first strand
Strand 2	A	5	14	parallel
Strand 3	A	69	72	parallel
Strand 4	A	303	306	parallel
Strand 5	A	294	296	anti-parallel
Strand 6	A	106	110	anti-parallel
Strand 7	A	129	132	anti-parallel
Strand 8	A	266	269	parallel
Strand 9	A	207	210	parallel
Strand 10	A	246	249	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	177	185	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	143	146	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	172	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	B	150	158	anti-parallel
Strand 4	B	165	170	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	5	14	parallel
Strand 3	B	69	72	parallel
Strand 4	B	303	307	parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	129	132	anti-parallel
Strand 8	B	266	269	parallel
Strand 9	B	207	211	parallel
Strand 10	B	246	250	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	35	37	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	11	14	parallel
Strand 3	C	69	72	parallel
Strand 4	C	303	307	parallel
Strand 5	C	291	296	anti-parallel
Strand 6	C	106	111	anti-parallel
Strand 7	C	129	132	anti-parallel
Strand 8	C	266	269	parallel
Strand 9	C	207	211	parallel
Strand 10	C	249	250	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	C	177	185	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	143	146	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	150	158	anti-parallel
Strand 3	D	150	158	anti-parallel
Strand 4	D	166	170	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	5	14	parallel
Strand 3	D	42	43	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	5	14	parallel
Strand 3	D	69	72	parallel
Strand 4	D	303	307	parallel
Strand 5	D	291	296	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	129	132	anti-parallel
Strand 8	D	266	269	parallel
Strand 9	D	207	211	parallel
Strand 10	D	246	250	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T7D