Analysis of interatomic Contacts of Structural Units in PDB entry:
8T7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T7J entry

There are 8 chains in PDB entry 8T7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	PRO 229
A	MET 231	LEU 385
B	HIS 17	PRO 229
B	MET 231	LEU 384
C	HIS 17	PRO 229
C	MET 231	GLU 383
D	HIS 17	PRO 229
D	MET 231	GLU 383

There are 72 helices in PDB entry 8T7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed 310
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	45	56	Right-handed alpha
Helix 4	AA4	A	61	78	Right-handed alpha
Helix 5	AA5	A	87	102	Right-handed alpha
Helix 6	AA6	A	104	111	Right-handed alpha
Helix 7	AA7	A	126	128	Right-handed 310
Helix 8	AA8	A	136	143	Right-handed alpha
Helix 9	AA9	A	157	164	Right-handed alpha
Helix 10	AB1	A	188	200	Right-handed alpha
Helix 11	AB2	A	214	219	Right-handed alpha
Helix 12	AB3	A	228	232	Right-handed alpha
Helix 13	AB4	A	243	253	Right-handed alpha
Helix 14	AB5	A	254	256	Right-handed 310
Helix 15	AB6	A	264	279	Right-handed alpha
Helix 16	AB7	A	282	303	Right-handed alpha
Helix 17	AB8	A	336	345	Right-handed alpha
Helix 18	AB9	A	370	383	Right-handed alpha
Helix 19	AC1	B	20	25	Right-handed 310
Helix 20	AC2	B	36	40	Right-handed 310
Helix 21	AC3	B	45	56	Right-handed alpha
Helix 22	AC4	B	61	78	Right-handed alpha
Helix 23	AC5	B	87	101	Right-handed alpha
Helix 24	AC6	B	104	111	Right-handed alpha
Helix 25	AC7	B	126	128	Right-handed 310
Helix 26	AC8	B	136	143	Right-handed alpha
Helix 27	AC9	B	157	165	Right-handed alpha
Helix 28	AD1	B	188	200	Right-handed alpha
Helix 29	AD2	B	216	220	Right-handed 310
Helix 30	AD3	B	228	232	Right-handed alpha
Helix 31	AD4	B	243	253	Right-handed alpha
Helix 32	AD5	B	254	256	Right-handed 310
Helix 33	AD6	B	264	279	Right-handed alpha
Helix 34	AD7	B	282	303	Right-handed alpha
Helix 35	AD8	B	336	344	Right-handed alpha
Helix 36	AD9	B	370	383	Right-handed alpha
Helix 37	AE1	C	20	25	Right-handed 310
Helix 38	AE2	C	36	40	Right-handed 310
Helix 39	AE3	C	45	56	Right-handed alpha
Helix 40	AE4	C	61	78	Right-handed alpha
Helix 41	AE5	C	87	102	Right-handed alpha
Helix 42	AE6	C	104	111	Right-handed alpha
Helix 43	AE7	C	126	128	Right-handed 310
Helix 44	AE8	C	135	143	Right-handed alpha
Helix 45	AE9	C	157	165	Right-handed alpha
Helix 46	AF1	C	188	200	Right-handed alpha
Helix 47	AF2	C	216	220	Right-handed 310
Helix 48	AF3	C	228	232	Right-handed alpha
Helix 49	AF4	C	243	253	Right-handed alpha
Helix 50	AF5	C	254	256	Right-handed 310
Helix 51	AF6	C	264	281	Right-handed alpha
Helix 52	AF7	C	282	301	Right-handed alpha
Helix 53	AF8	C	338	344	Right-handed alpha
Helix 54	AF9	C	370	382	Right-handed alpha
Helix 55	AG1	D	20	25	Right-handed 310
Helix 56	AG2	D	36	40	Right-handed 310
Helix 57	AG3	D	45	56	Right-handed alpha
Helix 58	AG4	D	61	78	Right-handed alpha
Helix 59	AG5	D	87	102	Right-handed alpha
Helix 60	AG6	D	104	109	Right-handed alpha
Helix 61	AG7	D	126	128	Right-handed 310
Helix 62	AG8	D	136	143	Right-handed alpha
Helix 63	AG9	D	157	165	Right-handed alpha
Helix 64	AH1	D	188	200	Right-handed alpha
Helix 65	AH2	D	216	220	Right-handed 310
Helix 66	AH3	D	228	232	Right-handed alpha
Helix 67	AH4	D	243	253	Right-handed alpha
Helix 68	AH5	D	254	256	Right-handed 310
Helix 69	AH6	D	264	279	Right-handed alpha
Helix 70	AH7	D	282	303	Right-handed alpha
Helix 71	AH8	D	336	345	Right-handed alpha
Helix 72	AH9	D	370	381	Right-handed alpha

There are 15 sheets in PDB entry 8T7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	350	352	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	203	206	parallel
Strand 5	A	169	175	parallel
Strand 6	A	120	124	parallel
Strand 7	A	146	150	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	134	135	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	313	first strand
Strand 2	A	321	327	anti-parallel
Strand 3	A	361	364	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	350	352	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	223	227	anti-parallel
Strand 4	B	203	206	parallel
Strand 5	B	169	175	parallel
Strand 6	B	120	124	parallel
Strand 7	B	146	150	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	134	135	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	361	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	350	351	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	223	227	anti-parallel
Strand 4	C	203	206	parallel
Strand 5	C	169	175	parallel
Strand 6	C	120	124	parallel
Strand 7	C	146	150	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	314	first strand
Strand 2	C	318	325	anti-parallel
Strand 3	C	362	364	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	350	352	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	223	227	anti-parallel
Strand 4	D	203	206	parallel
Strand 5	D	169	175	parallel
Strand 6	D	120	124	parallel
Strand 7	D	146	150	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	134	135	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	321	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T7J