Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T8A entry

There are 4 chains in PDB entry 8T8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	ILE 594
B	PRO 13	ILE 594
C	GLN 12	ILE 594
D	GLN 12	ILE 594

There are 90 helices in PDB entry 8T8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	37	Right-handed alpha
Helix 2	AA2	A	86	96	Right-handed alpha
Helix 3	AA3	A	115	119	Right-handed 310
Helix 4	AA4	A	131	137	Right-handed alpha
Helix 5	AA5	A	138	141	Right-handed 310
Helix 6	AA6	A	153	166	Right-handed alpha
Helix 7	AA7	A	173	180	Right-handed alpha
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	201	209	Right-handed alpha
Helix 10	AB1	A	222	227	Right-handed alpha
Helix 11	AB2	A	244	246	Right-handed 310
Helix 12	AB3	A	247	258	Right-handed alpha
Helix 13	AB4	A	265	269	Right-handed alpha
Helix 14	AB5	A	323	329	Right-handed alpha
Helix 15	AB6	A	332	336	Right-handed 310
Helix 16	AB7	A	337	343	Right-handed alpha
Helix 17	AB8	A	364	368	Right-handed 310
Helix 18	AB9	A	430	434	Right-handed 310
Helix 19	AC1	A	451	466	Right-handed alpha
Helix 20	AC2	A	499	507	Right-handed alpha
Helix 21	AC3	A	520	524	Right-handed 310
Helix 22	AC4	A	529	545	Right-handed alpha
Helix 23	AC5	A	578	589	Right-handed alpha
Helix 24	AC6	B	22	37	Right-handed alpha
Helix 25	AC7	B	38	40	Right-handed 310
Helix 26	AC8	B	86	96	Right-handed alpha
Helix 27	AC9	B	132	137	Right-handed alpha
Helix 28	AD1	B	153	166	Right-handed alpha
Helix 29	AD2	B	168	172	Right-handed 310
Helix 30	AD3	B	173	178	Right-handed alpha
Helix 31	AD4	B	188	190	Right-handed 310
Helix 32	AD5	B	191	200	Right-handed alpha
Helix 33	AD6	B	201	211	Right-handed alpha
Helix 34	AD7	B	222	227	Right-handed alpha
Helix 35	AD8	B	246	258	Right-handed alpha
Helix 36	AD9	B	265	268	Right-handed 310
Helix 37	AE1	B	323	330	Right-handed alpha
Helix 38	AE2	B	333	336	Right-handed 310
Helix 39	AE3	B	337	344	Right-handed alpha
Helix 40	AE4	B	362	368	Right-handed 310
Helix 41	AE5	B	430	434	Right-handed 310
Helix 42	AE6	B	451	466	Right-handed alpha
Helix 43	AE7	B	499	507	Right-handed alpha
Helix 44	AE8	B	529	544	Right-handed alpha
Helix 45	AE9	B	578	591	Right-handed alpha
Helix 46	AF1	C	22	33	Right-handed alpha
Helix 47	AF2	C	86	97	Right-handed alpha
Helix 48	AF3	C	123	127	Right-handed 310
Helix 49	AF4	C	132	137	Right-handed alpha
Helix 50	AF5	C	138	141	Right-handed 310
Helix 51	AF6	C	153	166	Right-handed alpha
Helix 52	AF7	C	173	178	Right-handed alpha
Helix 53	AF8	C	186	190	Right-handed 310
Helix 54	AF9	C	191	200	Right-handed alpha
Helix 55	AG1	C	201	212	Right-handed alpha
Helix 56	AG2	C	222	227	Right-handed alpha
Helix 57	AG3	C	246	257	Right-handed alpha
Helix 58	AG4	C	265	268	Right-handed 310
Helix 59	AG5	C	323	329	Right-handed alpha
Helix 60	AG6	C	337	344	Right-handed alpha
Helix 61	AG7	C	364	368	Right-handed 310
Helix 62	AG8	C	451	466	Right-handed alpha
Helix 63	AG9	C	499	506	Right-handed alpha
Helix 64	AH1	C	520	524	Right-handed 310
Helix 65	AH2	C	529	537	Right-handed alpha
Helix 66	AH3	C	578	591	Right-handed alpha
Helix 67	AH4	C	592	594	Right-handed 310
Helix 68	AH5	D	22	37	Right-handed alpha
Helix 69	AH6	D	86	96	Right-handed alpha
Helix 70	AH7	D	132	135	Right-handed 310
Helix 71	AH8	D	137	141	Right-handed 310
Helix 72	AH9	D	146	150	Right-handed 310
Helix 73	AI1	D	153	166	Right-handed alpha
Helix 74	AI2	D	173	178	Right-handed alpha
Helix 75	AI3	D	188	190	Right-handed 310
Helix 76	AI4	D	191	200	Right-handed alpha
Helix 77	AI5	D	201	210	Right-handed alpha
Helix 78	AI6	D	222	227	Right-handed alpha
Helix 79	AI7	D	246	259	Right-handed alpha
Helix 80	AI8	D	265	268	Right-handed 310
Helix 81	AI9	D	323	328	Right-handed alpha
Helix 82	AJ1	D	332	336	Right-handed 310
Helix 83	AJ2	D	337	345	Right-handed alpha
Helix 84	AJ3	D	362	368	Right-handed 310
Helix 85	AJ4	D	390	392	Right-handed 310
Helix 86	AJ5	D	430	434	Right-handed 310
Helix 87	AJ6	D	451	466	Right-handed alpha
Helix 88	AJ7	D	499	507	Right-handed alpha
Helix 89	AJ8	D	529	545	Right-handed alpha
Helix 90	AJ9	D	578	593	Right-handed alpha

There are 27 sheets in PDB entry 8T8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	42	45	parallel
Strand 3	A	14	19	parallel
Strand 4	A	312	320	parallel
Strand 5	A	289	292	anti-parallel
Strand 6	A	278	281	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	42	45	parallel
Strand 3	A	14	19	parallel
Strand 4	A	312	320	parallel
Strand 5	A	516	518	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	239	241	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	121	124	anti-parallel
Strand 3	A	372	376	parallel
Strand 4	A	382	388	anti-parallel
Strand 5	A	401	405	anti-parallel
Strand 6	A	353	359	anti-parallel
Strand 7	A	476	481	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	299	first strand
Strand 2	A	302	306	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	493	494	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	317	320	parallel
Strand 3	B	516	518	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	270	271	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	68	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	239	241	anti-parallel
Strand 3	B	100	102	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	372	376	parallel
Strand 4	B	382	388	anti-parallel
Strand 5	B	401	406	anti-parallel
Strand 6	B	353	359	anti-parallel
Strand 7	B	476	481	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	185	186	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	289	292	anti-parallel
Strand 3	B	312	315	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	302	305	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	42	45	parallel
Strand 3	C	16	19	parallel
Strand 4	C	318	321	parallel
Strand 5	C	516	519	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	129	130	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	281	first strand
Strand 2	C	289	299	anti-parallel
Strand 3	C	302	305	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	281	first strand
Strand 2	C	289	299	anti-parallel
Strand 3	C	311	315	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	349	first strand
Strand 2	C	492	494	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	404	first strand
Strand 2	C	352	359	anti-parallel
Strand 3	C	476	482	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	42	45	parallel
Strand 3	D	14	19	parallel
Strand 4	D	305	320	parallel
Strand 5	D	289	296	anti-parallel
Strand 6	D	274	281	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	42	45	parallel
Strand 3	D	14	19	parallel
Strand 4	D	305	320	parallel
Strand 5	D	516	518	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	67	69	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	238	241	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	121	124	anti-parallel
Strand 3	D	372	376	parallel
Strand 4	D	382	388	anti-parallel
Strand 5	D	401	405	anti-parallel
Strand 6	D	352	359	anti-parallel
Strand 7	D	476	482	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	185	186	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	491	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8A