Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T8E entry

There are 3 chains in PDB entry 8T8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 76ARG 1100
C
 GLY 17GLY 547
B
 LYS 196ARG 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8T8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 125Right-handed alpha
Helix 2
AA2
A
165 170Right-handed alpha
Helix 3
AA3
A
200 211Right-handed alpha
Helix 4
AA4
A
223 231Right-handed alpha
Helix 5
AA5
A
235 247Right-handed alpha
Helix 6
AA6
A
251 256Right-handed alpha
Helix 7
AA7
A
258 263Right-handed alpha
Helix 8
AA8
A
951 959Right-handed alpha
Helix 9
AA9
A
960 966Right-handed alpha
Helix 10
AB1
A
973 981Right-handed alpha
Helix 11
AB2
A
1020 1037Right-handed alpha
Helix 12
AB3
A
1054 1071Right-handed alpha
Helix 13
AB4
C
25 41Right-handed alpha
Helix 14
AB5
C
43 53Right-handed alpha
Helix 15
AB6
C
71 76Right-handed alpha
Helix 16
AB7
C
84 91Right-handed alpha
Helix 17
AB8
C
99 109Right-handed alpha
Helix 18
AB9
C
111 116Right-handed alpha
Helix 19
AC1
C
124 140Right-handed alpha
Helix 20
AC2
C
204 209Right-handed alpha
Helix 21
AC3
C
215 224Right-handed alpha
Helix 22
AC4
C
229 234Right-handed alpha
Helix 23
AC5
C
235 237Right-handed 310
Helix 24
AC6
C
240 259Right-handed alpha
Helix 25
AC7
C
268 273Right-handed alpha
Helix 26
AC8
C
274 276Right-handed 310
Helix 27
AC9
C
279 287Right-handed alpha
Helix 28
AD1
C
296 301Right-handed alpha
Helix 29
AD2
C
339 347Right-handed alpha
Helix 30
AD3
C
347 356Right-handed alpha
Helix 31
AD4
C
388 392Right-handed 310
Helix 32
AD5
C
394 403Right-handed alpha
Helix 33
AD6
C
413 430Right-handed alpha
Helix 34
AD7
C
438 442Right-handed 310
Helix 35
AD8
C
444 458Right-handed alpha
Helix 36
AD9
C
471 497Right-handed alpha
Helix 37
AE1
C
506 528Right-handed alpha
Helix 38
AE2
C
538 547Right-handed alpha
Helix 39
AE3
B
208 220Right-handed alpha
Helix 40
AE4
B
245 254Right-handed alpha
Helix 41
AE5
B
270 274Right-handed 310
Helix 42
AE6
B
283 292Right-handed alpha
Helix 43
AE7
B
293 295Right-handed 310
Helix 44
AE8
B
300 316Right-handed alpha
Helix 45
AE9
B
317 322Right-handed alpha
Helix 46
AF1
B
329 337Right-handed alpha
Helix 47
AF2
B
339 346Right-handed alpha
Helix 48
AF3
B
356 363Right-handed alpha
Helix 49
AF4
B
364 365Right-handed 310
Helix 50
AF5
B
366 368Right-handed 310
Helix 51
AF6
B
369 378Right-handed alpha
Helix 52
AF7
B
388 398Right-handed alpha
Helix 53
AF8
B
408 416Right-handed alpha
Helix 54
AF9
B
432 440Right-handed alpha
Helix 55
AG1
B
452 460Right-handed alpha
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There are 3 sheets in PDB entry 8T8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
172 179anti-parallel
Strand 5
A
189 190anti-parallel
Strand 6
A
196 198anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
989 995first strand
Strand 2
A
1000 1006anti-parallel
Strand 3
A
1014 1015anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1043 1044first strand
Strand 2
A
1076 1077parallel
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