Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T8F entry

There are 5 chains in PDB entry 8T8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 196	ARG 464
C	GLY 17	GLY 547
D	PRO 32	ASP 1093
E	SER 79	ASP 1084
G	THR 285	PRO 399

There are 68 helices in PDB entry 8T8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	208	220	Right-handed alpha
Helix 2	AA2	B	245	254	Right-handed alpha
Helix 3	AA3	B	270	274	Right-handed 310
Helix 4	AA4	B	283	292	Right-handed alpha
Helix 5	AA5	B	293	295	Right-handed 310
Helix 6	AA6	B	300	316	Right-handed alpha
Helix 7	AA7	B	317	323	Right-handed alpha
Helix 8	AA8	B	329	336	Right-handed alpha
Helix 9	AA9	B	339	346	Right-handed alpha
Helix 10	AB1	B	356	363	Right-handed alpha
Helix 11	AB2	B	364	365	Right-handed 310
Helix 12	AB3	B	366	368	Right-handed 310
Helix 13	AB4	B	369	378	Right-handed alpha
Helix 14	AB5	B	388	401	Right-handed alpha
Helix 15	AB6	B	406	416	Right-handed alpha
Helix 16	AB7	B	432	440	Right-handed alpha
Helix 17	AB8	B	450	462	Right-handed alpha
Helix 18	AB9	C	25	41	Right-handed alpha
Helix 19	AC1	C	43	53	Right-handed alpha
Helix 20	AC2	C	65	77	Right-handed alpha
Helix 21	AC3	C	83	91	Right-handed alpha
Helix 22	AC4	C	99	116	Right-handed alpha
Helix 23	AC5	C	124	141	Right-handed alpha
Helix 24	AC6	C	204	209	Right-handed alpha
Helix 25	AC7	C	215	224	Right-handed alpha
Helix 26	AC8	C	229	235	Right-handed alpha
Helix 27	AC9	C	241	261	Right-handed alpha
Helix 28	AD1	C	268	273	Right-handed alpha
Helix 29	AD2	C	274	277	Right-handed 310
Helix 30	AD3	C	279	286	Right-handed alpha
Helix 31	AD4	C	296	301	Right-handed alpha
Helix 32	AD5	C	339	357	Right-handed alpha
Helix 33	AD6	C	358	365	Right-handed alpha
Helix 34	AD7	C	388	392	Right-handed 310
Helix 35	AD8	C	394	403	Right-handed alpha
Helix 36	AD9	C	413	430	Right-handed alpha
Helix 37	AE1	C	438	442	Right-handed 310
Helix 38	AE2	C	444	458	Right-handed alpha
Helix 39	AE3	C	471	498	Right-handed alpha
Helix 40	AE4	C	506	529	Right-handed alpha
Helix 41	AE5	C	538	547	Right-handed alpha
Helix 42	AE6	D	77	86	Right-handed alpha
Helix 43	AE7	D	89	93	Right-handed 310
Helix 44	AE8	D	98	103	Right-handed 310
Helix 45	AE9	D	158	169	Right-handed alpha
Helix 46	AF1	D	183	189	Right-handed alpha
Helix 47	AF2	D	192	205	Right-handed alpha
Helix 48	AF3	D	205	246	Right-handed alpha
Helix 49	AF4	D	884	946	Right-handed alpha
Helix 50	AF5	D	960	964	Right-handed 310
Helix 51	AF6	D	987	1003	Right-handed alpha
Helix 52	AF7	D	1021	1037	Right-handed alpha
Helix 53	AF8	D	1078	1082	Right-handed 310
Helix 54	AF9	E	115	125	Right-handed alpha
Helix 55	AG1	E	130	134	Right-handed 310
Helix 56	AG2	E	139	143	Right-handed 310
Helix 57	AG3	E	200	208	Right-handed alpha
Helix 58	AG4	E	225	231	Right-handed alpha
Helix 59	AG5	E	235	247	Right-handed alpha
Helix 60	AG6	E	248	287	Right-handed alpha
Helix 61	AG7	E	924	966	Right-handed alpha
Helix 62	AG8	E	971	981	Right-handed alpha
Helix 63	AG9	E	1021	1037	Right-handed alpha
Helix 64	AH1	E	1054	1070	Right-handed alpha
Helix 65	AH2	G	288	300	Right-handed alpha
Helix 66	AH3	G	318	334	Right-handed alpha
Helix 67	AH4	G	362	373	Right-handed alpha
Helix 68	AH5	G	384	389	Right-handed 310

There are 7 sheets in PDB entry 8T8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	110	117	anti-parallel
Strand 4	D	134	141	anti-parallel
Strand 5	D	150	152	anti-parallel
Strand 6	D	156	157	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	1010	1013	parallel
Strand 3	D	1043	1047	parallel
Strand 4	D	65	68	parallel
Strand 5	D	1062	1065	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	950	956	first strand
Strand 2	D	965	971	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	149	155	anti-parallel
Strand 3	E	174	180	anti-parallel
Strand 4	E	186	190	anti-parallel
Strand 5	E	196	198	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	989	992	first strand
Strand 2	E	1003	1006	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1043	1044	first strand
Strand 2	E	1076	1077	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	306	first strand
Strand 2	G	349	351	anti-parallel
Strand 3	G	337	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8F