Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T8M entry

There are 2 chains in PDB entry 8T8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	LEU 826
B	ARG 25	MET 720

There are 50 helices in PDB entry 8T8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	80	Right-handed alpha
Helix 2	AA2	A	101	113	Right-handed alpha
Helix 3	AA3	A	151	163	Right-handed alpha
Helix 4	AA4	A	164	166	Right-handed 310
Helix 5	AA5	A	177	181	Right-handed 310
Helix 6	AA6	A	195	208	Right-handed alpha
Helix 7	AA7	A	209	211	Right-handed 310
Helix 8	AA8	A	222	237	Right-handed alpha
Helix 9	AA9	A	253	265	Right-handed alpha
Helix 10	AB1	A	266	268	Right-handed 310
Helix 11	AB2	A	279	293	Right-handed alpha
Helix 12	AB3	A	334	342	Right-handed alpha
Helix 13	AB4	A	354	364	Right-handed alpha
Helix 14	AB5	A	396	416	Right-handed alpha
Helix 15	AB6	A	433	442	Right-handed alpha
Helix 16	AB7	A	577	604	Right-handed alpha
Helix 17	AB8	A	609	613	Right-handed 310
Helix 18	AB9	A	614	637	Right-handed alpha
Helix 19	AC1	A	640	669	Right-handed alpha
Helix 20	AC2	A	692	715	Right-handed alpha
Helix 21	AC3	A	740	761	Right-handed alpha
Helix 22	AC4	A	769	793	Right-handed alpha
Helix 23	AC5	A	800	826	Right-handed alpha
Helix 24	AC6	B	66	81	Right-handed alpha
Helix 25	AC7	B	101	115	Right-handed alpha
Helix 26	AC8	B	151	165	Right-handed alpha
Helix 27	AC9	B	195	209	Right-handed alpha
Helix 28	AD1	B	221	239	Right-handed alpha
Helix 29	AD2	B	253	266	Right-handed alpha
Helix 30	AD3	B	279	294	Right-handed alpha
Helix 31	AD4	B	318	322	Right-handed 310
Helix 32	AD5	B	334	342	Right-handed alpha
Helix 33	AD6	B	354	364	Right-handed alpha
Helix 34	AD7	B	396	419	Right-handed alpha
Helix 35	AD8	B	426	430	Right-handed 310
Helix 36	AD9	B	433	442	Right-handed alpha
Helix 37	AE1	B	495	500	Right-handed alpha
Helix 38	AE2	B	577	604	Right-handed alpha
Helix 39	AE3	B	609	613	Right-handed 310
Helix 40	AE4	B	614	634	Right-handed alpha
Helix 41	AE5	B	640	669	Right-handed alpha
Helix 42	AE6	B	689	715	Right-handed alpha
Helix 43	AE7	B	736	761	Right-handed alpha
Helix 44	AE8	B	769	793	Right-handed alpha
Helix 45	AE9	B	800	826	Right-handed alpha
Helix 46	AF1	C	30	34	Right-handed 310
Helix 47	AF2	C	89	93	Right-handed 310
Helix 48	AF3	D	30	34	Right-handed 310
Helix 49	AF4	D	64	67	Right-handed 310
Helix 50	AF5	D	89	93	Right-handed 310

There are 18 sheets in PDB entry 8T8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	171	parallel
Strand 6	A	188	190	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	215	219	parallel
Strand 3	A	273	277	parallel
Strand 4	A	300	303	parallel
Strand 5	A	325	329	parallel
Strand 6	A	466	473	anti-parallel
Strand 7	A	479	488	anti-parallel
Strand 8	A	491	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	524	first strand
Strand 2	A	532	536	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	548	551	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	730	733	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	171	parallel
Strand 6	B	188	190	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	248	first strand
Strand 2	B	214	219	parallel
Strand 3	B	273	276	parallel
Strand 4	B	300	303	parallel
Strand 5	B	325	329	parallel
Strand 6	B	466	473	anti-parallel
Strand 7	B	479	488	anti-parallel
Strand 8	B	491	494	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	453	455	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	524	first strand
Strand 2	B	532	536	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	550	551	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	124	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	119	124	parallel
Strand 3	C	94	101	anti-parallel
Strand 4	C	112	114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	19	27	anti-parallel
Strand 3	D	80	86	anti-parallel
Strand 4	D	71	75	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	119	124	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	47	53	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	119	124	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	112	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T8M