Analysis of interatomic Contacts of Structural Units in PDB entry:
8T9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8T9E entry

There is 1 chain in PDB entry 8T9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 171PRO 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8T9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 228Right-handed 310
Helix 2
AA2
A
230 238Right-handed alpha
Helix 3
AA3
A
285 288Right-handed 310
Helix 4
AA4
A
315 329Right-handed alpha
Helix 5
AA5
A
336 340Right-handed 310
Helix 6
AA6
A
342 347Right-handed alpha
Helix 7
AA7
A
377 382Right-handed 310
Helix 8
AA8
A
415 419Right-handed 310
Helix 9
AA9
A
467 472Right-handed alpha
Helix 10
AB1
A
473 478Right-handed alpha
Helix 11
AB2
A
514 518Right-handed 310
Helix 12
AB3
A
556 559Right-handed 310
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There are 8 sheets in PDB entry 8T9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
175 191parallel
Strand 3
A
530 546anti-parallel
Strand 4
A
244 254anti-parallel
Strand 5
A
394 401anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
293 296anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
503 507anti-parallel
Strand 4
A
279 283anti-parallel
Strand 5
A
383 385anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
308 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 440first strand
Strand 2
A
450 453anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
561 564anti-parallel
Strand 3
A
487 489anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
525 526anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
587 589anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il