Analysis of interatomic Contacts of Structural Units in PDB entry:
8T9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8T9W entry

There are 3 chains in PDB entry 8T9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 428
B	THR 2	PRO 434
C	GLN 1	ARG 391

There are 76 helices in PDB entry 8T9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	34	48	Right-handed alpha
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	84	101	Right-handed alpha
Helix 5	AA5	A	111	115	Right-handed 310
Helix 6	AA6	A	128	144	Right-handed alpha
Helix 7	AA7	A	164	181	Right-handed alpha
Helix 8	AA8	A	182	186	Right-handed 310
Helix 9	AA9	A	199	204	Right-handed alpha
Helix 10	AB1	A	223	233	Right-handed alpha
Helix 11	AB2	A	251	254	Right-handed 310
Helix 12	AB3	A	255	260	Right-handed alpha
Helix 13	AB4	A	263	278	Right-handed alpha
Helix 14	AB5	A	286	291	Right-handed alpha
Helix 15	AB6	A	306	311	Right-handed alpha
Helix 16	AB7	A	313	329	Right-handed alpha
Helix 17	AB8	A	338	341	Right-handed 310
Helix 18	AB9	A	347	350	Right-handed 310
Helix 19	AC1	B	28	33	Right-handed alpha
Helix 20	AC2	B	34	48	Right-handed alpha
Helix 21	AC3	B	75	79	Right-handed 310
Helix 22	AC4	B	84	101	Right-handed alpha
Helix 23	AC5	B	111	115	Right-handed 310
Helix 24	AC6	B	128	143	Right-handed alpha
Helix 25	AC7	B	164	181	Right-handed alpha
Helix 26	AC8	B	182	186	Right-handed 310
Helix 27	AC9	B	199	204	Right-handed alpha
Helix 28	AD1	B	223	233	Right-handed alpha
Helix 29	AD2	B	251	254	Right-handed 310
Helix 30	AD3	B	255	260	Right-handed alpha
Helix 31	AD4	B	263	277	Right-handed alpha
Helix 32	AD5	B	286	291	Right-handed alpha
Helix 33	AD6	B	306	311	Right-handed alpha
Helix 34	AD7	B	313	328	Right-handed alpha
Helix 35	AD8	B	338	341	Right-handed 310
Helix 36	AD9	B	347	350	Right-handed 310
Helix 37	AE1	B	428	430	Right-handed 310
Helix 38	AE2	C	28	33	Right-handed alpha
Helix 39	AE3	C	34	48	Right-handed alpha
Helix 40	AE4	C	75	79	Right-handed 310
Helix 41	AE5	C	84	101	Right-handed alpha
Helix 42	AE6	C	111	115	Right-handed 310
Helix 43	AE7	C	128	143	Right-handed alpha
Helix 44	AE8	C	164	181	Right-handed alpha
Helix 45	AE9	C	182	186	Right-handed 310
Helix 46	AF1	C	199	204	Right-handed alpha
Helix 47	AF2	C	223	233	Right-handed alpha
Helix 48	AF3	C	251	254	Right-handed 310
Helix 49	AF4	C	255	260	Right-handed alpha
Helix 50	AF5	C	263	277	Right-handed alpha
Helix 51	AF6	C	286	291	Right-handed alpha
Helix 52	AF7	C	306	311	Right-handed alpha
Helix 53	AF8	C	313	328	Right-handed alpha
Helix 54	AF9	C	338	341	Right-handed 310
Helix 55	AG1	C	347	350	Right-handed 310
Helix 56	AG2	C	376	378	Right-handed 310
Helix 57	AG3	C	428	430	Right-handed 310
Helix 58	AG4	D	28	33	Right-handed alpha
Helix 59	AG5	D	34	48	Right-handed alpha
Helix 60	AG6	D	75	79	Right-handed 310
Helix 61	AG7	D	84	101	Right-handed alpha
Helix 62	AG8	D	111	115	Right-handed 310
Helix 63	AG9	D	128	143	Right-handed alpha
Helix 64	AH1	D	164	181	Right-handed alpha
Helix 65	AH2	D	182	186	Right-handed 310
Helix 66	AH3	D	199	204	Right-handed alpha
Helix 67	AH4	D	223	233	Right-handed alpha
Helix 68	AH5	D	251	254	Right-handed 310
Helix 69	AH6	D	255	260	Right-handed alpha
Helix 70	AH7	D	263	277	Right-handed alpha
Helix 71	AH8	D	286	291	Right-handed alpha
Helix 72	AH9	D	306	311	Right-handed alpha
Helix 73	AI1	D	313	328	Right-handed alpha
Helix 74	AI2	D	338	341	Right-handed 310
Helix 75	AI3	D	347	350	Right-handed 310
Helix 76	AI4	D	428	430	Right-handed 310

There are 20 sheets in PDB entry 8T9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	12	14	anti-parallel
Strand 3	A	17	18	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	149	154	parallel
Strand 3	A	104	108	parallel
Strand 4	A	52	56	parallel
Strand 5	A	22	25	parallel
Strand 6	A	282	284	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	240	242	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	360	365	anti-parallel
Strand 4	A	420	426	anti-parallel
Strand 5	A	382	388	anti-parallel
Strand 6	A	395	402	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	407	409	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	12	14	anti-parallel
Strand 3	B	17	19	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	149	154	parallel
Strand 3	B	104	108	parallel
Strand 4	B	52	56	parallel
Strand 5	B	22	25	parallel
Strand 6	B	282	283	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	240	242	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	352	356	anti-parallel
Strand 3	B	360	365	anti-parallel
Strand 4	B	420	426	anti-parallel
Strand 5	B	382	388	anti-parallel
Strand 6	B	395	402	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	406	409	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	12	14	anti-parallel
Strand 3	C	17	18	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	149	154	parallel
Strand 3	C	104	108	parallel
Strand 4	C	52	56	parallel
Strand 5	C	22	25	parallel
Strand 6	C	282	284	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	240	242	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	336	first strand
Strand 2	C	352	356	anti-parallel
Strand 3	C	360	365	anti-parallel
Strand 4	C	420	426	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	395	402	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	374	first strand
Strand 2	C	406	409	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	12	14	anti-parallel
Strand 3	D	17	19	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	149	154	parallel
Strand 3	D	104	108	parallel
Strand 4	D	52	56	parallel
Strand 5	D	22	25	parallel
Strand 6	D	282	283	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	240	242	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	352	356	anti-parallel
Strand 3	D	360	365	anti-parallel
Strand 4	D	420	426	anti-parallel
Strand 5	D	383	388	anti-parallel
Strand 6	D	395	399	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	D	406	409	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8T9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8T9W