Analysis of interatomic Contacts of Structural Units in PDB entry:
8TAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TAD entry

There is 1 chain in PDB entry 8TAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8TAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
52 55Right-handed 310
Helix 3
AA3
A
97 104Right-handed alpha
Helix 4
AA4
A
105 107Right-handed 310
Helix 5
AA5
A
122 131Right-handed alpha
Helix 6
AA6
A
133 137Right-handed 310
Helix 7
AA7
A
140 154Right-handed alpha
Helix 8
AA8
A
160 181Right-handed alpha
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
201 220Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8TAD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
57 63parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
81 86anti-parallel
Strand 5
A
89 92anti-parallel
Strand 6
A
113 116parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 233first strand
Strand 2
A
239 244anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il