Analysis of interatomic Contacts of Structural Units in PDB entry:
8TAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TAF entry

There are 8 chains in PDB entry 8TAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	GLN 12	PRO 321
L	ARG 14	PRO 321
M	GLN 12	PRO 321
N	ARG 14	ASN 320
O	MET 13	ASN 320
P	VAL 15	ASN 320
Q	VAL 15	ASN 320
R	ARG 14	ASN 320

There are105 helices in PDB entry 8TAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	18	23	Right-handed 310
Helix 2	AA2	J	37	42	Right-handed 310
Helix 3	AA3	J	49	58	Right-handed alpha
Helix 4	AA4	J	88	91	Right-handed 310
Helix 5	AA5	J	100	105	Right-handed alpha
Helix 6	AA6	J	106	110	Right-handed 310
Helix 7	AA7	J	113	122	Right-handed alpha
Helix 8	AA8	J	124	137	Right-handed alpha
Helix 9	AA9	J	143	164	Right-handed alpha
Helix 10	AB1	J	184	188	Right-handed 310
Helix 11	AB2	J	191	199	Right-handed alpha
Helix 12	AB3	J	201	212	Right-handed alpha
Helix 13	AB4	J	278	285	Right-handed alpha
Helix 14	AB5	L	18	23	Right-handed 310
Helix 15	AB6	L	37	42	Right-handed 310
Helix 16	AB7	L	49	58	Right-handed alpha
Helix 17	AB8	L	88	91	Right-handed 310
Helix 18	AB9	L	100	105	Right-handed alpha
Helix 19	AC1	L	106	110	Right-handed 310
Helix 20	AC2	L	112	122	Right-handed alpha
Helix 21	AC3	L	124	135	Right-handed alpha
Helix 22	AC4	L	144	164	Right-handed alpha
Helix 23	AC5	L	181	186	Right-handed alpha
Helix 24	AC6	L	191	199	Right-handed alpha
Helix 25	AC7	L	201	212	Right-handed alpha
Helix 26	AC8	L	278	286	Right-handed alpha
Helix 27	AC9	M	18	23	Right-handed 310
Helix 28	AD1	M	37	42	Right-handed 310
Helix 29	AD2	M	49	56	Right-handed alpha
Helix 30	AD3	M	88	91	Right-handed 310
Helix 31	AD4	M	100	105	Right-handed alpha
Helix 32	AD5	M	106	110	Right-handed 310
Helix 33	AD6	M	111	122	Right-handed alpha
Helix 34	AD7	M	124	137	Right-handed alpha
Helix 35	AD8	M	140	164	Right-handed alpha
Helix 36	AD9	M	184	188	Right-handed 310
Helix 37	AE1	M	191	199	Right-handed alpha
Helix 38	AE2	M	201	212	Right-handed alpha
Helix 39	AE3	M	278	285	Right-handed alpha
Helix 40	AE4	N	18	22	Right-handed 310
Helix 41	AE5	N	37	42	Right-handed 310
Helix 42	AE6	N	49	58	Right-handed alpha
Helix 43	AE7	N	100	105	Right-handed alpha
Helix 44	AE8	N	106	110	Right-handed 310
Helix 45	AE9	N	112	122	Right-handed alpha
Helix 46	AF1	N	124	137	Right-handed alpha
Helix 47	AF2	N	140	164	Right-handed alpha
Helix 48	AF3	N	191	199	Right-handed alpha
Helix 49	AF4	N	201	212	Right-handed alpha
Helix 50	AF5	N	256	261	Right-handed 310
Helix 51	AF6	N	278	285	Right-handed alpha
Helix 52	AF7	O	18	23	Right-handed 310
Helix 53	AF8	O	37	42	Right-handed 310
Helix 54	AF9	O	49	58	Right-handed alpha
Helix 55	AG1	O	88	91	Right-handed 310
Helix 56	AG2	O	100	105	Right-handed alpha
Helix 57	AG3	O	106	110	Right-handed 310
Helix 58	AG4	O	111	122	Right-handed alpha
Helix 59	AG5	O	124	138	Right-handed alpha
Helix 60	AG6	O	144	164	Right-handed alpha
Helix 61	AG7	O	184	188	Right-handed 310
Helix 62	AG8	O	191	199	Right-handed alpha
Helix 63	AG9	O	201	212	Right-handed alpha
Helix 64	AH1	O	254	259	Right-handed alpha
Helix 65	AH2	O	278	286	Right-handed alpha
Helix 66	AH3	P	18	23	Right-handed 310
Helix 67	AH4	P	37	42	Right-handed 310
Helix 68	AH5	P	49	58	Right-handed alpha
Helix 69	AH6	P	88	91	Right-handed 310
Helix 70	AH7	P	100	105	Right-handed alpha
Helix 71	AH8	P	106	110	Right-handed 310
Helix 72	AH9	P	112	122	Right-handed alpha
Helix 73	AI1	P	124	138	Right-handed alpha
Helix 74	AI2	P	147	164	Right-handed alpha
Helix 75	AI3	P	184	188	Right-handed 310
Helix 76	AI4	P	191	200	Right-handed alpha
Helix 77	AI5	P	201	212	Right-handed alpha
Helix 78	AI6	P	278	285	Right-handed alpha
Helix 79	AI7	Q	18	22	Right-handed 310
Helix 80	AI8	Q	37	42	Right-handed 310
Helix 81	AI9	Q	49	58	Right-handed alpha
Helix 82	AJ1	Q	88	91	Right-handed 310
Helix 83	AJ2	Q	100	105	Right-handed alpha
Helix 84	AJ3	Q	106	110	Right-handed 310
Helix 85	AJ4	Q	112	122	Right-handed alpha
Helix 86	AJ5	Q	124	137	Right-handed alpha
Helix 87	AJ6	Q	140	164	Right-handed alpha
Helix 88	AJ7	Q	182	186	Right-handed 310
Helix 89	AJ8	Q	191	199	Right-handed alpha
Helix 90	AJ9	Q	201	212	Right-handed alpha
Helix 91	AK1	Q	278	285	Right-handed alpha
Helix 92	AK2	R	18	22	Right-handed 310
Helix 93	AK3	R	37	42	Right-handed 310
Helix 94	AK4	R	49	58	Right-handed alpha
Helix 95	AK5	R	88	91	Right-handed 310
Helix 96	AK6	R	100	105	Right-handed alpha
Helix 97	AK7	R	106	110	Right-handed 310
Helix 98	AK8	R	112	122	Right-handed alpha
Helix 99	AK9	R	124	136	Right-handed alpha
Helix 100	AL1	R	140	164	Right-handed alpha
Helix 101	AL2	R	184	188	Right-handed 310
Helix 102	AL3	R	191	199	Right-handed alpha
Helix 103	AL4	R	201	212	Right-handed alpha
Helix 104	AL5	R	254	258	Right-handed 310
Helix 105	AL6	R	278	287	Right-handed alpha

There are 26 sheets in PDB entry 8TAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	81	first strand
Strand 2	J	59	67	anti-parallel
Strand 3	O	289	290	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	93	96	first strand
Strand 2	J	238	240	anti-parallel
Strand 3	J	233	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	179	first strand
Strand 2	J	301	304	anti-parallel
Strand 3	J	216	219	parallel
Strand 4	J	222	225	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	67	first strand
Strand 2	L	73	81	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	93	96	first strand
Strand 2	L	238	240	anti-parallel
Strand 3	L	233	235	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	176	179	first strand
Strand 2	L	301	304	anti-parallel
Strand 3	L	216	219	parallel
Strand 4	L	222	225	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	268	275	first strand
Strand 2	M	267	274	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	81	first strand
Strand 2	M	59	66	anti-parallel
Strand 3	N	289	290	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	96	first strand
Strand 2	M	238	240	anti-parallel
Strand 3	M	233	235	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	176	179	first strand
Strand 2	M	301	304	anti-parallel
Strand 3	M	216	219	parallel
Strand 4	M	222	225	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	67	first strand
Strand 2	N	73	81	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	93	96	first strand
Strand 2	N	238	240	anti-parallel
Strand 3	N	233	235	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	176	179	first strand
Strand 2	N	301	304	anti-parallel
Strand 3	N	216	219	parallel
Strand 4	N	222	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	67	first strand
Strand 2	O	73	81	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	93	96	first strand
Strand 2	O	238	240	anti-parallel
Strand 3	O	233	235	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	176	179	first strand
Strand 2	O	301	304	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	267	275	first strand
Strand 2	P	267	275	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	73	81	first strand
Strand 2	P	59	67	anti-parallel
Strand 3	Q	289	290	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	93	96	first strand
Strand 2	P	238	240	anti-parallel
Strand 3	P	233	235	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	177	179	first strand
Strand 2	P	301	303	anti-parallel
Strand 3	P	216	219	parallel
Strand 4	P	222	223	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	59	67	first strand
Strand 2	Q	73	81	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	93	96	first strand
Strand 2	Q	238	240	anti-parallel
Strand 3	Q	233	235	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	176	179	first strand
Strand 2	Q	301	304	anti-parallel
Strand 3	Q	216	219	parallel
Strand 4	Q	222	223	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	59	66	first strand
Strand 2	R	74	81	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	93	96	first strand
Strand 2	R	238	240	anti-parallel
Strand 3	R	233	235	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	176	179	first strand
Strand 2	R	301	304	anti-parallel
Strand 3	R	216	219	parallel
Strand 4	R	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TAF