Analysis of interatomic Contacts of Structural Units in PDB entry:
8TAS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TAS entry

There are 15 chains in PDB entry 8TAS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 81	ARG 682
E	LYS 17	PRO 751
G	TYR 80	ARG 441
I	THR 22	ALA 135
H	A 20	G 212
J	LYS 20	GLY 102
R	ALA 12	CYS 119
S	ARG 27	LYS 122
T	C 15	T 207
U	ALA 12	CYS 119
V	LYS 28	LYS 122
W	LYS 37	ALA 135
X	LYS 16	GLY 102
O	LYS 4	ASN 410
Y	ASN 170	ARG 295

There are 78 helices in PDB entry 8TAS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	82	89	Right-handed alpha
Helix 2	AA2	D	90	107	Right-handed alpha
Helix 3	AA3	D	111	119	Right-handed 310
Helix 4	AA4	D	133	146	Right-handed alpha
Helix 5	AA5	D	238	245	Right-handed alpha
Helix 6	AA6	D	459	471	Right-handed alpha
Helix 7	AA7	D	502	508	Right-handed alpha
Helix 8	AA8	D	539	543	Right-handed 310
Helix 9	AA9	D	575	579	Right-handed 310
Helix 10	AB1	D	589	603	Right-handed alpha
Helix 11	AB2	D	607	625	Right-handed alpha
Helix 12	AB3	D	628	651	Right-handed alpha
Helix 13	AB4	D	652	666	Right-handed alpha
Helix 14	AB5	D	670	682	Right-handed alpha
Helix 15	AB6	E	18	63	Right-handed alpha
Helix 16	AB7	E	167	180	Right-handed alpha
Helix 17	AB8	E	221	231	Right-handed alpha
Helix 18	AB9	E	236	248	Right-handed alpha
Helix 19	AC1	E	273	284	Right-handed alpha
Helix 20	AC2	E	333	344	Right-handed alpha
Helix 21	AC3	E	438	453	Right-handed alpha
Helix 22	AC4	E	455	463	Right-handed alpha
Helix 23	AC5	E	471	482	Right-handed alpha
Helix 24	AC6	E	500	515	Right-handed alpha
Helix 25	AC7	E	539	544	Right-handed alpha
Helix 26	AC8	E	576	581	Right-handed alpha
Helix 27	AC9	E	609	614	Right-handed alpha
Helix 28	AD1	E	652	666	Right-handed alpha
Helix 29	AD2	E	687	692	Right-handed 310
Helix 30	AD3	E	734	742	Right-handed alpha
Helix 31	AD4	G	128	130	Right-handed 310
Helix 32	AD5	G	232	234	Right-handed 310
Helix 33	AD6	G	267	280	Right-handed alpha
Helix 34	AD7	I	44	56	Right-handed alpha
Helix 35	AD8	I	63	79	Right-handed alpha
Helix 36	AD9	I	85	114	Right-handed alpha
Helix 37	AE1	I	120	131	Right-handed alpha
Helix 38	AE2	J	24	29	Right-handed 310
Helix 39	AE3	J	30	41	Right-handed alpha
Helix 40	AE4	J	49	76	Right-handed alpha
Helix 41	AE5	J	83	93	Right-handed alpha
Helix 42	AE6	R	16	21	Right-handed alpha
Helix 43	AE7	R	26	36	Right-handed alpha
Helix 44	AE8	R	46	73	Right-handed alpha
Helix 45	AE9	R	79	90	Right-handed alpha
Helix 46	AF1	R	90	95	Right-handed alpha
Helix 47	AF2	S	34	46	Right-handed alpha
Helix 48	AF3	S	53	81	Right-handed alpha
Helix 49	AF4	S	87	99	Right-handed alpha
Helix 50	AF5	S	101	121	Right-handed alpha
Helix 51	AF6	U	16	21	Right-handed alpha
Helix 52	AF7	U	26	37	Right-handed alpha
Helix 53	AF8	U	46	72	Right-handed alpha
Helix 54	AF9	U	79	89	Right-handed alpha
Helix 55	AG1	U	90	95	Right-handed alpha
Helix 56	AG2	U	112	116	Right-handed 310
Helix 57	AG3	V	34	44	Right-handed alpha
Helix 58	AG4	V	53	81	Right-handed alpha
Helix 59	AG5	V	88	99	Right-handed alpha
Helix 60	AG6	V	102	121	Right-handed alpha
Helix 61	AG7	W	44	55	Right-handed alpha
Helix 62	AG8	W	63	76	Right-handed alpha
Helix 63	AG9	W	86	114	Right-handed alpha
Helix 64	AH1	W	120	132	Right-handed alpha
Helix 65	AH2	X	24	29	Right-handed 310
Helix 66	AH3	X	30	42	Right-handed alpha
Helix 67	AH4	X	50	76	Right-handed alpha
Helix 68	AH5	X	82	93	Right-handed alpha
Helix 69	AH6	O	5	28	Right-handed alpha
Helix 70	AH7	O	208	210	Right-handed 310
Helix 71	AH8	O	348	350	Right-handed 310
Helix 72	AH9	O	355	360	Right-handed alpha
Helix 73	AI1	O	406	410	Right-handed 310
Helix 74	AI2	Y	191	210	Right-handed alpha
Helix 75	AI3	Y	257	259	Right-handed 310
Helix 76	AI4	Y	270	272	Right-handed 310
Helix 77	AI5	Y	275	281	Right-handed alpha
Helix 78	AI6	Y	282	285	Right-handed 310

There are 32 sheets in PDB entry 8TAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	354	361	anti-parallel
Strand 3	D	314	318	anti-parallel
Strand 4	Y	219	231	anti-parallel
Strand 5	Y	237	243	anti-parallel
Strand 6	Y	252	255	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	157	160	anti-parallel
Strand 3	D	354	361	anti-parallel
Strand 4	D	314	318	anti-parallel
Strand 5	Y	219	231	anti-parallel
Strand 6	Y	264	268	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	211	first strand
Strand 2	D	184	191	anti-parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	297	300	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	443	first strand
Strand 2	D	428	434	anti-parallel
Strand 3	D	485	491	parallel
Strand 4	D	474	478	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	557	560	first strand
Strand 2	D	525	530	anti-parallel
Strand 3	O	32	39	anti-parallel
Strand 4	O	398	404	anti-parallel
Strand 5	O	386	394	anti-parallel
Strand 6	O	377	383	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	566	567	first strand
Strand 2	D	572	573	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	82	87	anti-parallel
Strand 3	G	83	89	anti-parallel
Strand 4	G	433	438	anti-parallel
Strand 5	G	424	429	anti-parallel
Strand 6	G	413	418	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	121	first strand
Strand 2	E	649	651	parallel
Strand 3	E	679	681	anti-parallel
Strand 4	E	671	672	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	291	292	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	619	623	first strand
Strand 2	E	629	633	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	642	643	first strand
Strand 2	E	710	717	anti-parallel
Strand 3	E	700	707	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	112	116	anti-parallel
Strand 3	G	120	126	anti-parallel
Strand 4	G	132	139	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	154	first strand
Strand 2	G	161	167	anti-parallel
Strand 3	G	172	175	anti-parallel
Strand 4	G	182	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	198	first strand
Strand 2	G	205	210	anti-parallel
Strand 3	G	214	219	anti-parallel
Strand 4	G	224	230	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	244	first strand
Strand 2	G	250	255	anti-parallel
Strand 3	G	261	264	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	315	first strand
Strand 2	G	318	323	anti-parallel
Strand 3	G	328	333	anti-parallel
Strand 4	G	350	352	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	369	370	first strand
Strand 2	G	376	379	anti-parallel
Strand 3	G	387	390	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	84	first strand
Strand 2	J	80	81	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	119	first strand
Strand 2	J	45	46	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	96	98	first strand
Strand 2	R	100	102	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	42	43	first strand
Strand 2	S	85	86	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	78	first strand
Strand 2	S	50	51	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	42	43	first strand
Strand 2	V	85	86	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	77	78	first strand
Strand 2	V	50	51	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	83	84	first strand
Strand 2	X	80	81	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	49	first strand
Strand 2	O	61	68	anti-parallel
Strand 3	O	77	87	anti-parallel
Strand 4	O	115	123	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	129	133	first strand
Strand 2	O	136	143	anti-parallel
Strand 3	O	150	153	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	172	173	first strand
Strand 2	O	216	217	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	183	185	first strand
Strand 2	O	192	196	anti-parallel
Strand 3	O	202	206	anti-parallel
Strand 4	O	221	223	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	230	235	first strand
Strand 2	O	242	247	anti-parallel
Strand 3	O	251	256	anti-parallel
Strand 4	O	267	270	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	280	281	first strand
Strand 2	O	288	292	anti-parallel
Strand 3	O	298	302	anti-parallel
Strand 4	O	311	313	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	320	325	first strand
Strand 2	O	332	337	anti-parallel
Strand 3	O	342	346	anti-parallel
Strand 4	O	366	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TAS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TAS