Analysis of interatomic Contacts of Structural Units in PDB entry:
8TB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TB0 entry

There are 4 chains in PDB entry 8TB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 1	LEU 235
R	ALA 45	LEU 1849
B	ARG 8	ASN 340
G	ALA 12	PHE 61

There are 27 helices in PDB entry 8TB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	28	32	Right-handed 310
Helix 2	AA2	F	61	65	Right-handed 310
Helix 3	AA3	F	73	77	Right-handed 310
Helix 4	AA4	R	46	68	Right-handed alpha
Helix 5	AA5	R	70	75	Right-handed 310
Helix 6	AA6	R	76	92	Right-handed alpha
Helix 7	AA7	R	93	101	Right-handed alpha
Helix 8	AA8	R	114	145	Right-handed alpha
Helix 9	AA9	R	148	154	Right-handed alpha
Helix 10	AB1	R	155	180	Right-handed alpha
Helix 11	AB2	R	202	237	Right-handed alpha
Helix 12	AB3	R	284	313	Right-handed alpha
Helix 13	AB4	R	321	331	Right-handed alpha
Helix 14	AB5	R	332	342	Right-handed alpha
Helix 15	AB6	R	345	353	Right-handed alpha
Helix 16	AB7	R	1470	1494	Right-handed alpha
Helix 17	AB8	R	1507	1512	Right-handed alpha
Helix 18	AB9	R	1690	1694	Right-handed 310
Helix 19	AC1	R	1721	1733	Right-handed alpha
Helix 20	AC2	R	1748	1759	Right-handed alpha
Helix 21	AC3	R	1763	1767	Right-handed alpha
Helix 22	AC4	R	1768	1771	Right-handed 310
Helix 23	AC5	R	1786	1805	Right-handed alpha
Helix 24	AC6	R	1826	1846	Right-handed alpha
Helix 25	AC7	B	9	26	Right-handed alpha
Helix 26	AC8	G	13	24	Right-handed alpha
Helix 27	AC9	G	29	44	Right-handed alpha

There are 15 sheets in PDB entry 8TB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	22	25	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	92	94	anti-parallel
Strand 4	F	38	39	anti-parallel
Strand 5	F	45	46	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	81	84	anti-parallel
Strand 3	F	68	70	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	35	first strand
Strand 2	F	97	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	143	149	anti-parallel
Strand 3	F	199	204	anti-parallel
Strand 4	F	192	196	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	136	first strand
Strand 2	F	231	234	parallel
Strand 3	F	213	215	anti-parallel
Strand 4	F	165	167	anti-parallel
Strand 5	F	174	175	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1495	1496	first strand
Strand 2	R	1672	1674	parallel
Strand 3	R	1667	1669	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1500	1501	first strand
Strand 2	R	1699	1703	parallel
Strand 3	R	1742	1746	parallel
Strand 4	R	1814	1817	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	319	320	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	199	202	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	242	245	anti-parallel
Strand 3	B	250	252	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TB0